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A830080D01Rik
Gene Detail
Symbol

Name
ID
A830080D01Rik
RIKEN cDNA A830080D01 gene
MGI:2685992
Synonyms
2310067E24Rik, LOC382252
Feature Type
protein coding gene
Genetic Map
Chromosome X
73.55 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
ChrX:159526688-159593081 bp, + strand
From VEGA annotation of GRCm38

  66394 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:28098  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: CXorf23
Gene Tree: A830080D01Rik

Human
homologs
CXorf23, chromosome X open reading frame 23
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 256643
neXtProt AC: NX_A2AJT9

Human Chr (Location): Xp22.12; chrX:19912860-19990934 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(146) : Gene trapped(142) Radiation induced(1) Spontaneous(1) Targeted(2)
Genomic Mutations involving A830080D01Rik (2)
Incidental mutations (data from APF )
 
Male chimeras hemizygous for either of two different gene trapped alleles of this gene appear normal at E8.5.
 
Phenotype Images(4)
Interactions
A830080D01Rik interacts with 227 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component mitochondrion
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (29)    Tissues (29)    Images (8)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 29
cDNA source data(46)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100490423    NEW 
Molecular
reagents
All nucleic(47) Genomic(1) cDNA(46)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000019441 (Evidence)
Ensembl Gene Model ENSMUSG00000044150 (Evidence)
Entrez Gene 382252 (Evidence)
UniGene 296254
DFCI TC1583073, TC1606599, TC1654961
DoTS DT.111022217, DT.111022218, DT.531835
NIA Mouse Gene Index U020362
Consensus CDS Project CCDS30503.2
International Mouse Phenotyping Consortium Status A830080D01Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019441 VEGA Gene Model | MGI Sequence Detail 66394 C57BL/6J ±  kb
transcript OTTMUST00000046417 VEGA | MGI Sequence Detail 3366 Not Applicable 
polypeptide OTTMUSP00000020956 VEGA | MGI Sequence Detail 752 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(8) UniProt(3)
Polymorphisms
SNPs within 2kb(112 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR029199 THRAP3/BCLAF1 family
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)
Other
accession IDs
MGI:1916899

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory