Cpxcr1 Gene Detail

Summary

• Symbol
  Cpxcr1
• Name
  CPX chromosome region, candidate 1
• Synonyms
  LOC382239

• Feature Type
  protein coding gene
• IDs
  MGI:2685989
  NCBI Gene: 382239
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:116448944-116478783 bp, + strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685989	protein coding gene	ChrX:116448944-116478783 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036041	protein coding gene	ChrX:113243444-113266729 (+)
A/J	MGP_AJ_G0036022	protein coding gene	ChrX:113001021-113022826 (+)
AKR/J	MGP_AKRJ_G0035940	protein coding gene	ChrX:116575693-116600445 (+)
BALB/cJ	MGP_BALBcJ_G0036014	protein coding gene	ChrX:111493056-111517714 (+)
C3H/HeJ	MGP_C3HHeJ_G0035718	protein coding gene	ChrX:113618060-113657925 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036538	protein coding gene	ChrX:116567443-116593467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033364	protein coding gene	ChrX:109356624-109385289 (+)
CAST/EiJ	MGP_CASTEiJ_G0035005	protein coding gene	ChrX:97405472-97430317 (+)
CBA/J	MGP_CBAJ_G0035694	protein coding gene	ChrX:120260592-120297219 (+)
DBA/2J	MGP_DBA2J_G0035847	protein coding gene	ChrX:112236395-112267610 (+)
FVB/NJ	MGP_FVBNJ_G0035790	protein coding gene	ChrX:111636072-111667475 (+)
LP/J	MGP_LPJ_G0035940	protein coding gene	ChrX:114161655-114192639 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035819	protein coding gene	ChrX:126022946-126062234 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036565	protein coding gene	ChrX:112766583-112797843 (+)
PWK/PhJ	MGP_PWKPhJ_G0034700	protein coding gene	ChrX:94763702-94790156 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034531	protein coding gene	ChrX:98153016-98172923 (+)
WSB/EiJ	MGP_WSBEiJ_G0035143	protein coding gene	ChrX:111481494-111504668 (+)

Homology

• Human Ortholog
  CPXCR1, CPX chromosome region candidate 1

• Vertebrate Orthologs
  4

• Human Ortholog
  CPXCR1, CPX chromosome region candidate 1
  Orthology source: HomoloGene, HGNC
• Synonyms
  CT77
• Links
  HGNC:2332

  NCBI Gene ID: 53336

  neXtProt AC: NX_Q8N123

  UniProt: Q8N123

  
  
• Chr Location
  Xq21.31; chrX:88747225-88754785 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 50039
  1 human;1 mouse;1 chimpanzee;1 macaque, rhesus
  
• HCOP
  human homology predictions: CPXCR1
• Gene Tree
  Cpxcr1
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  631
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Cpxcr1 interacts with 75 markers (Mir19a, Mir33, Mir129-1, ...) View All

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS30367.1
• UniGene
  336224

• Ensembl
  ENSMUSG00000072995 (Evidence)
• NCBI Gene
  382239

Representative Sequences			Length	Strain/Species
genomic	382239	NCBI Gene Model | MGI Sequence Detail	29840	C57BL/6J
transcript	NM_001033471	RefSeq | MGI Sequence Detail	1596	C57BL/6
polypeptide	Q3V0P1	UniProt | EBI | MGI Sequence Detail	322	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000005839 CPX chromosomal region candidate gene 1 protein
  (term hierarchy)
• InterPro Domains
  IPR039710 CPX chromosomal region candidate gene 1 protein

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 15
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Cpxcr1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5676	ChrX:116448927-116448931 (+)	-15 bp
Tssr161917	ChrX:116448939-116448948 (+)	0 bp
Tssr161918	ChrX:116448958-116448969 (+)	20 bp