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Pasd1 Gene Detail
Summary
  • Symbol
    Pasd1
  • Name
    PAS domain containing repressor 1
  • Synonyms
    Gm1141, LOC382221
Location &
Maps
more
  • Sequence Map
    ChrX:70976044-70984477 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    57 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685987
 protein coding gene ChrX:70964553-70984477 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035786
 protein coding gene ChrX:67600818-67618071 (+)
A/J MGP_AJ_G0035770
 protein coding gene ChrX:67844417-67861378 (+)
AKR/J MGP_AKRJ_G0035692
 protein coding gene ChrX:69653680-69670873 (+)
BALB/cJ MGP_BALBcJ_G0035757
 protein coding gene ChrX:66881870-66899074 (+)
C3H/HeJ MGP_C3HHeJ_G0035460
 protein coding gene ChrX:68111273-68128470 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036287
 protein coding gene ChrX:69650102-69668445 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033134
 protein coding gene ChrX:67068669-67085328 (+)
CAST/EiJ MGP_CASTEiJ_G0034752
 protein coding gene ChrX:53500506-53518528 (+)
CBA/J MGP_CBAJ_G0035435
 protein coding gene ChrX:71602735-71619920 (+)
DBA/2J MGP_DBA2J_G0035588
 protein coding gene ChrX:67318831-67336036 (+)
FVB/NJ MGP_FVBNJ_G0035539
 protein coding gene ChrX:66676400-66693381 (+)
LP/J MGP_LPJ_G0035677
 protein coding gene ChrX:68465460-68482666 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035574
 protein coding gene ChrX:74157500-74176512 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036308
 protein coding gene ChrX:67452770-67469951 (+)
PWK/PhJ MGP_PWKPhJ_G0034452
 protein coding gene ChrX:51504334-51526617 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034287
 protein coding gene ChrX:54410262-54432859 (+)
WSB/EiJ MGP_WSBEiJ_G0034894
 protein coding gene ChrX:66777790-66795033 (+)



Homology
more
  • Human Ortholog
    PASD1, PAS domain containing repressor 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PASD1, PAS domain containing repressor 1
  • Synonyms
    CT63, CT64, OXTES1
  • Links
    NCBI Gene ID: 139135
    neXtProt AC: NX_Q8IV76
    UniProt: Q8IV76

  • Chr Location
    Xq28; chrX:151563675-151676739 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 382221 NCBI Gene Model | MGI Sequence Detail 8434 C57BL/6J ±  kb
transcript NR_027801 RefSeq | MGI Sequence Detail 2148 C57BL/6  
polypeptide J9JI72 UniProt | EBI | MGI Sequence Detail 758 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR047230 Circadian locomoter output cycles protein kaput-like
    IPR000014 PAS domain
    IPR035965 PAS domain superfamily
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory