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Susd5 Gene Detail
Summary
  • Symbol
    Susd5
  • Name
    sushi domain containing 5
  • Synonyms
    LOC382111
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685972
    NCBI Gene: 382111
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:114057354-114098733 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 64.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    236 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685972
protein coding gene Chr9:114057140-114098733 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035383
protein coding gene Chr9:116455748-116504235 (+)
A/J MGP_AJ_G0035364
protein coding gene Chr9:112124060-112167625 (+)
AKR/J MGP_AKRJ_G0035295
protein coding gene Chr9:114977713-115023583 (+)
BALB/cJ MGP_BALBcJ_G0035359
protein coding gene Chr9:111938977-111981869 (+)
C3H/HeJ MGP_C3HHeJ_G0035067
protein coding gene Chr9:115498875-115541030 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035880
protein coding gene Chr9:119611043-119655586 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032767
protein coding gene Chr9:109266453-109307155 (+)
CAST/EiJ MGP_CASTEiJ_G0034373
protein coding gene Chr9:115345802-115389699 (+)
CBA/J MGP_CBAJ_G0035034
protein coding gene Chr9:124018188-124065795 (+)
DBA/2J MGP_DBA2J_G0035192
protein coding gene Chr9:111584224-111626474 (+)
FVB/NJ MGP_FVBNJ_G0035139
protein coding gene Chr9:110409279-110451807 (+)
LP/J MGP_LPJ_G0035272
protein coding gene Chr9:116742416-116785930 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035180
protein coding gene Chr9:125253731-125298011 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035901
protein coding gene Chr9:115372012-115413118 (+)
PWK/PhJ MGP_PWKPhJ_G0034078
protein coding gene Chr9:111878173-111919435 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033913
protein coding gene Chr9:115431746-115477797 (+)
WSB/EiJ MGP_WSBEiJ_G0034493
protein coding gene Chr9:115219718-115268735 (+)



Homology
more
  • Human Ortholog
    SUSD5, sushi domain containing 5
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SUSD5, sushi domain containing 5
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 26032
    neXtProt AC: NX_O60279
    UniProt: O60279

  • Chr Location
    3p22.3; chr3:33150041-33219215 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 382111 NCBI Gene Model | MGI Sequence Detail 41380 C57BL/6J ±  kb
transcript NM_001101510 RefSeq | MGI Sequence Detail 3874 C57BL/6  
polypeptide NP_001094980 RefSeq | MGI Sequence Detail 619 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:216917 Fouillade C, et al., Transcriptome analysis for Notch3 target genes identifies Grip2 as a novel regulator of myogenic response in the cerebrovasculature. Arterioscler Thromb Vasc Biol. 2013 Jan;33(1):76-86

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory