About   Help   FAQ
Snx22 Gene Detail
Summary
  • Symbol
    Snx22
  • Name
    sorting nexin 22
  • Synonyms
    LOC382083
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685966
    NCBI Gene: 382083
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:66065176-66069719 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 35.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685966
protein coding gene Chr9:66065170-66069792 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034971
protein coding gene Chr9:65868008-65872563 (-)
A/J MGP_AJ_G0034951
protein coding gene Chr9:63612423-63616978 (-)
AKR/J MGP_AKRJ_G0034881
protein coding gene Chr9:65129427-65133982 (-)
BALB/cJ MGP_BALBcJ_G0034944
protein coding gene Chr9:63327364-63331919 (-)
C3H/HeJ MGP_C3HHeJ_G0034654
protein coding gene Chr9:65659660-65664215 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035463
protein coding gene Chr9:67651642-67656197 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032374
protein coding gene Chr9:63270736-63275301 (-)
CAST/EiJ MGP_CASTEiJ_G0033975
protein coding gene Chr9:65854658-65859179 (-)
CBA/J MGP_CBAJ_G0034625
protein coding gene Chr9:70006496-70011051 (-)
DBA/2J MGP_DBA2J_G0034784
protein coding gene Chr9:63388023-63392579 (-)
FVB/NJ MGP_FVBNJ_G0034726
protein coding gene Chr9:62730640-62735193 (-)
LP/J MGP_LPJ_G0034867
protein coding gene Chr9:66117196-66121751 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034768
protein coding gene Chr9:71254305-71258860 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035485
protein coding gene Chr9:65238021-65242576 (-)
PWK/PhJ MGP_PWKPhJ_G0033679
protein coding gene Chr9:63586609-63591162 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033513
protein coding gene Chr9:65525128-65529664 (-)
WSB/EiJ MGP_WSBEiJ_G0034088
protein coding gene Chr9:65136974-65141529 (-)



Homology
more
  • Human Ortholog
    SNX22, sorting nexin 22
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX22, sorting nexin 22
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79856
    neXtProt AC: NX_Q96L94
    UniProt: Q96L94

  • Chr Location
    15q22.31; chr15:64151698-64157481 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11723
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNX22
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039452 Ensembl Gene Model | MGI Sequence Detail 4544 C57BL/6J ±  kb
transcript ENSMUST00000044711 Ensembl | MGI Sequence Detail 2543 Not Applicable  
polypeptide ENSMUSP00000044389 Ensembl | MGI Sequence Detail 192 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001683 Phox homologous domain
    IPR036871 PX domain superfamily
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Phenotypes 9
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
  • Latest
    J:257973 Brahler S, et al., Opposing Roles of Dendritic Cell Subsets in Experimental GN. J Am Soc Nephrol. 2018 Jan;29(1):138-154

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/23/2020
MGI 6.15
The Jackson Laboratory