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Foxr1 Gene Detail
Summary
  • Symbol
    Foxr1
  • Name
    forkhead box R1
  • Synonyms
    Foxn5, LOC382074
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685961
    NCBI Gene: 382074
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:44434234-44440868 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 24.84 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685961
protein coding gene Chr9:44433773-44441136 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034710
protein coding gene Chr9:42922696-42929363 (-)
A/J MGP_AJ_G0034691
protein coding gene Chr9:41726197-41732832 (-)
AKR/J MGP_AKRJ_G0034617
protein coding gene Chr9:42589070-42595704 (-)
BALB/cJ MGP_BALBcJ_G0034682
protein coding gene Chr9:41472336-41478971 (-)
C3H/HeJ MGP_C3HHeJ_G0034393
protein coding gene Chr9:43047413-43054048 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035203
protein coding gene Chr9:44194610-44201244 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032118
protein coding gene Chr9:41299394-41306055 (-)
CAST/EiJ MGP_CASTEiJ_G0033715
protein coding gene Chr9:42893872-42900541 (-)
CBA/J MGP_CBAJ_G0034365
protein coding gene Chr9:45807565-45814199 (-)
DBA/2J MGP_DBA2J_G0034524
protein coding gene Chr9:41627420-41634055 (-)
FVB/NJ MGP_FVBNJ_G0034465
protein coding gene Chr9:40880531-40887165 (-)
LP/J MGP_LPJ_G0034605
protein coding gene Chr9:43227382-43234049 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034509
protein coding gene Chr9:47646851-47653486 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035224
protein coding gene Chr9:42488324-42494958 (-)
PWK/PhJ MGP_PWKPhJ_G0033421
protein coding gene Chr9:41504384-41511480 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033255
protein coding gene Chr9:42811475-42819465 (-)
WSB/EiJ MGP_WSBEiJ_G0033828
protein coding gene Chr9:42530467-42537101 (-)



Homology
more
  • Human Ortholog
    FOXR1, forkhead box R1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    FOXR1, forkhead box R1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DLNB13, FOXN5
  • Links
    NCBI Gene ID: 283150
    neXtProt AC: NX_Q6PIV2
    UniProt: Q6PIV2

  • Chr Location
    11q23.3; chr11:118971398-118981601 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 382074 NCBI Gene Model | MGI Sequence Detail 6635 C57BL/6J ±  kb
transcript NM_001033469 RefSeq | MGI Sequence Detail 1666 C57BL/6  
polypeptide Q3UTB7 UniProt | EBI | MGI Sequence Detail 268 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory