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Ccdc84 Gene Detail
Summary
  • Symbol
    Ccdc84
  • Name
    coiled-coil domain containing 84
  • Synonyms
    D630044F24Rik, LOC382073
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685960
    NCBI Gene: 382073
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:44410159-44418084 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 24.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685960
protein coding gene Chr9:44410159-44418569 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034709
protein coding gene Chr9:42896461-42905681 (-)
A/J MGP_AJ_G0034690
protein coding gene Chr9:41698833-41706673 (-)
AKR/J MGP_AKRJ_G0034616
protein coding gene Chr9:42563518-42571832 (-)
BALB/cJ MGP_BALBcJ_G0034681
protein coding gene Chr9:41445896-41453686 (-)
C3H/HeJ MGP_C3HHeJ_G0034392
protein coding gene Chr9:43018578-43026402 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035202
protein coding gene Chr9:44169523-44178439 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032117
protein coding gene Chr9:41277601-41284882 (-)
CAST/EiJ MGP_CASTEiJ_G0033714
protein coding gene Chr9:42868303-42876394 (-)
CBA/J MGP_CBAJ_G0034364
protein coding gene Chr9:45766631-45777120 (-)
DBA/2J MGP_DBA2J_G0034523
protein coding gene Chr9:41600928-41608813 (-)
FVB/NJ MGP_FVBNJ_G0034464
protein coding gene Chr9:40855594-40863685 (-)
LP/J MGP_LPJ_G0034604
protein coding gene Chr9:43199961-43209197 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034508
protein coding gene Chr9:47618715-47626428 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035223
protein coding gene Chr9:42462699-42470872 (-)
PWK/PhJ MGP_PWKPhJ_G0033420
protein coding gene Chr9:41474358-41488017 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033254
protein coding gene Chr9:42784548-42792383 (-)
WSB/EiJ MGP_WSBEiJ_G0033827
protein coding gene Chr9:42501827-42511571 (-)



Homology
more
  • Human Ortholog
    CENATAC, centrosomal AT-AC splicing factor
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CENATAC, centrosomal AT-AC splicing factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCDC84, DLNB14
  • Links
    NCBI Gene ID: 338657
    neXtProt AC: NX_Q86UT8
    UniProt: Q86UT8

  • Chr Location
    11q23.3; chr11:118998067-119015793 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 382073 NCBI Gene Model | MGI Sequence Detail 7926 C57BL/6J ±  kb
transcript NR_151776 RefSeq | MGI Sequence Detail 1270 C57BL/6  
polypeptide Q4VA36 UniProt | EBI | MGI Sequence Detail 332 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/15/2020
MGI 6.15
The Jackson Laboratory