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Ccdc180 Gene Detail
Summary
  • Symbol
    Ccdc180
  • Name
    coiled-coil domain containing 180
  • Synonyms
    E230008N13Rik, LOC381522
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685871
    NCBI Gene: 381522
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:45890303-45950774 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 24.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    363 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685871
protein coding gene Chr4:45890303-45950774 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028249
protein coding gene Chr4:44155966-44221277 (+)
A/J MGP_AJ_G0028208
protein coding gene Chr4:42563890-42624872 (+)
AKR/J MGP_AKRJ_G0028158
protein coding gene Chr4:43582826-43646746 (+)
BALB/cJ MGP_BALBcJ_G0028228
protein coding gene Chr4:42648548-42708254 (+)
C3H/HeJ MGP_C3HHeJ_G0027949
protein coding gene Chr4:44194655-44257934 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028669
protein coding gene Chr4:45799092-45860865 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025978
protein coding gene Chr4:39950486-40012284 (+)
CAST/EiJ MGP_CASTEiJ_G0027388
protein coding gene Chr4:43747357-43812491 (+)
CBA/J MGP_CBAJ_G0027915
protein coding gene Chr4:47236983-47309342 (+)
DBA/2J MGP_DBA2J_G0028065
protein coding gene Chr4:42457005-42517519 (+)
FVB/NJ MGP_FVBNJ_G0028032
protein coding gene Chr4:41697267-41758478 (+)
LP/J MGP_LPJ_G0028164
protein coding gene Chr4:44211676-44273863 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028056
protein coding gene Chr4:50356635-50422506 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028704
protein coding gene Chr4:43808258-43869301 (+)
PWK/PhJ MGP_PWKPhJ_G0027113
protein coding gene Chr4:42539573-42604752 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026941
protein coding gene Chr4:43301854-43363387 (+)
WSB/EiJ MGP_WSBEiJ_G0027466
protein coding gene Chr4:43703270-43767572 (+)



Homology
more
  • Human Ortholog
    CCDC180, coiled-coil domain containing 180
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CCDC180, coiled-coil domain containing 180
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf174
  • Links
    NCBI Gene ID: 100499483
    UniProt: Q9P1Z9

  • Chr Location
    9q22.33; chr9:97307628-97377295 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 381522 NCBI Gene Model | MGI Sequence Detail 60472 C57BL/6J ±  kb
transcript NM_198660 RefSeq | MGI Sequence Detail 5081 C57BL/6  
polypeptide NP_941062 RefSeq | MGI Sequence Detail 1664 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR026701 Coiled-coil domain-containing protein 180
    IPR028089 Domain of unknown function DUF4455
    IPR027914 Domain of unknown function DUF4456
Molecular
Reagents
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  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/26/2019
MGI 6.14
The Jackson Laboratory