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Ccdc78
Gene Detail
Symbol

Name
ID
Ccdc78
coiled-coil domain containing 78
MGI:2685784
Synonyms
LOC381077, LOC381146
Feature Type
protein coding gene
Genetic Map
Chromosome 17
12.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:25786580-25790513 bp, + strand
From Ensembl annotation of GRCm38

  3934 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:105408  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: CCDC78
Gene Tree: Ccdc78

Human
homologs
CCDC78, coiled-coil domain containing 78
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 124093
neXtProt AC: NX_A2IDD5

Human Synonyms: C16orf25, CNM4, hsCCDC78, JFP10

Human Chr (Location): 16p13.3; chr16:722582-726881 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CCDC78

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Radiation induced(2) Targeted(1)
Genomic Mutations involving Ccdc78 (2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Ccdc78 interacts with 45 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cell projection organization, de novo centriole assembly, ...
Component centriole, cytoplasm, ...
Function molecular_function
Expression
cDNA source data(6)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN ccdc78    NEW 
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000071202 (Evidence)
Entrez Gene 381077 (Evidence)
UniGene 328867
DFCI TC1655113
DoTS DT.55235110
NIA Mouse Gene Index U017686
Consensus CDS Project CCDS50035.1
International Mouse Phenotyping Consortium Status Ccdc78
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071202 Ensembl Gene Model | MGI Sequence Detail 3934 C57BL/6J ±  kb
transcript ENSMUST00000095500 Ensembl | MGI Sequence Detail 1651 Not Applicable 
polypeptide ENSMUSP00000093155 Ensembl | MGI Sequence Detail 437 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(11) UniProt(1)
Polymorphisms
SNPs within 2kb(19 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000030377 coiled-coil domain-containing protein 78
References
(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)
Other
accession IDs
MGI:2685796

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory