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Ccdc78 Gene Detail
Summary
  • Symbol
    Ccdc78
  • Name
    coiled-coil domain containing 78
  • Synonyms
    LOC381077, LOC381146
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685784
    NCBI Gene: 381077
  • Gene Overview
    MyGene.info: CCDC78
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:25786580-25790513 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    19 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685784
protein coding gene Chr17:25786580-25790513 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023367
protein coding gene Chr17:24882674-24886570 (+)
A/J MGP_AJ_G0023326
protein coding gene Chr17:24159394-24163312 (+)
AKR/J MGP_AKRJ_G0023292
protein coding gene Chr17:24263447-24269148 (+)
BALB/cJ MGP_BALBcJ_G0023331
protein coding gene Chr17:24385029-24389350 (+)
C3H/HeJ MGP_C3HHeJ_G0023091
protein coding gene Chr17:24646968-24650859 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023773
protein coding gene Chr17:25935588-25939591 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021249
protein coding gene Chr17:21620573-21624538 (+)
CAST/EiJ MGP_CASTEiJ_G0022593
protein coding gene Chr17:24531082-24537993 (+)
CBA/J MGP_CBAJ_G0023066
protein coding gene Chr17:26842933-26849795 (+)
DBA/2J MGP_DBA2J_G0023196
protein coding gene Chr17:23759979-23763905 (+)
FVB/NJ MGP_FVBNJ_G0023166
protein coding gene Chr17:23500633-23505200 (+)
LP/J MGP_LPJ_G0023273
protein coding gene Chr17:25180404-25184315 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023185
protein coding gene Chr17:26458670-26462579 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023813
protein coding gene Chr17:24584307-24588253 (+)
PWK/PhJ MGP_PWKPhJ_G0022342
protein coding gene Chr17:22522962-22526814 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022160
protein coding gene Chr17:22656322-22660657 (+)
WSB/EiJ MGP_WSBEiJ_G0022656
protein coding gene Chr17:24635241-24639170 (+)



Homology
more
  • Human Ortholog
    CCDC78, coiled-coil domain containing 78
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC78, coiled-coil domain containing 78
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C16orf25, CNM4, hsCCDC78, JFP10
  • Links
    NCBI Gene ID: 124093
    neXtProt AC: NX_A2IDD5
    UniProt: A2IDD5

  • Chr Location
    16p13.3; chr16:722578-726880 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human CCDC78 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 381077 NCBI Gene Model | MGI Sequence Detail 3934 C57BL/6J ±  kb
transcript NM_001165929 RefSeq | MGI Sequence Detail 1651 C57BL/6  
polypeptide D3Z5T1 UniProt | EBI | MGI Sequence Detail 437 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685796
References
more
  • Summaries
    All 27
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory