About   Help   FAQ
Ccdc78
Gene Detail
 Symbol
Name
ID
Ccdc78
coiled-coil domain containing 78
MGI:2685784
Synonyms LOC381077, LOC381146
Feature Type protein coding gene
Genetic Map
Chromosome 17
12.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:25786580-25790513 bp, + strand
From NCBI annotation of GRCm38

  3934 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:105408  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Ccdc78

Human
homologs
Human Homolog CCDC78, coiled-coil domain containing 78
NCBI Gene ID 124093
neXtProt AC  NX_A2IDD5
Human Synonyms  C16orf25, CNM4, hsCCDC78, JFP10
Human Chr (Location)  16p13.3; chr16:722582-726923 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC78
Alleles
and
phenotypes
All alleles(2) : Targeted(1) Gene trapped(1)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cell projection organization, de novo centriole assembly, ...
Component centriole, cytoplasm, ...
Function molecular_function
Expression
cDNA source data(6)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(1)
Other database
links
Ensembl Gene ModelENSMUSG00000071202 (Evidence)
Entrez Gene381077 (Evidence)
UniGene328867
DFCITC1655113
DoTSDT.55235110
NIA Mouse Gene IndexU017686
Consensus CDS ProjectCCDS50035.1
International Mouse Knockout Project StatusCcdc78
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 381077 NCBI Gene Model | MGI Sequence Detail 3934 C57BL/6J ±  kb
transcript NM_001165929 RefSeq | MGI Sequence Detail 1651 C57BL/6 
polypeptide D3Z5T1 UniProt | EBI | MGI Sequence Detail 437 Not Applicable 

For the selected sequences
All sequences(13) RefSeq(3) UniProt(1)
Polymorphisms SNPs within 2kb(19 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000030377 coiled-coil domain-containing protein 78
Graphical View of Protein Domain Structure
References (Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(26)
Other
accession IDs
MGI:2685796

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory