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Pitpnm3
Gene Detail
Symbol

Name
ID
Pitpnm3
PITPNM family member 3
MGI:2685726
Synonyms
A330068P14Rik, Ackr6
Feature Type
protein coding gene
Genetic Map
Chromosome 11
43.82 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:72047528-72135778 bp, - strand
From VEGA annotation of GRCm38

  88251 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:66271  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: PITPNM3
Gene Tree: Pitpnm3

Human
homologs
PITPNM3, PITPNM family member 3
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 83394
neXtProt AC: NX_Q9BZ71

Human Synonyms: ACKR6, CORD5, NIR1, RDGBA3

Human Chr (Location): 17p13; chr17:6450344-6556557 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human PITPNM3

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Genomic Mutations involving Pitpnm3 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Pitpnm3 interacts with 371 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process transport
Component intracellular, membrane
Function lipid binding, metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (11)    Tissues (8)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 11
cDNA source data(29)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pitpnm3    NEW 
Molecular
reagents
All nucleic(31) Genomic(1) cDNA(30)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000006099 (Evidence)
Ensembl Gene Model ENSMUSG00000040543 (Evidence)
Entrez Gene 327958 (Evidence)
UniGene 351793
DFCI TC1645096, TC1633304, TC1610265
DoTS DT.40179559, DT.110510423, DT.91413121
NIA Mouse Gene Index U033021
Consensus CDS Project CCDS24978.1, CCDS36213.1
International Mouse Phenotyping Consortium Status Pitpnm3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006099 VEGA Gene Model | MGI Sequence Detail 88251 C57BL/6J ±  kb
transcript OTTMUST00000013780 VEGA | MGI Sequence Detail 6555 Not Applicable 
polypeptide OTTMUSP00000006387 VEGA | MGI Sequence Detail 974 Not Applicable 

For the selected sequences
All sequences(55) RefSeq(15) UniProt(2)
Polymorphisms
SNPs within 2kb(816 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004177 DDHD
InterPro IPR023214 HAD-like domain
InterPro IPR013209 LNS2, Lipin/Ned1/Smp2
InterPro IPR001666 Phosphatidylinositol transfer protein
Protein Ontology PR:000012758 membrane-associated phosphatidylinositol transfer protein 3
References
(Earliest) J:93300 Blackshaw S, et al., Genomic analysis of mouse retinal development. PLoS Biol. 2004 Oct;2(9):E247
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)
Other
accession IDs
MGI:2144294

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory