Gm830 Gene Detail

Summary

• Symbol
  Gm830
• Name
  predicted gene 830
• Synonyms
  LOC329892

• Feature Type
  lncRNA gene
• IDs
  MGI:2685676
  NCBI Gene: 329892
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:95355150-95375766 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685676	lncRNA gene	Chr4:95352961-95375766 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015559	unclassified non-coding RNA gene	Chr4:95538663-95563228 (-)
A/J	MGP_AJ_G0015536	unclassified non-coding RNA gene	Chr4:92198768-92224037 (-)
AKR/J	MGP_AKRJ_G0015500	unclassified non-coding RNA gene	Chr4:94435350-94461965 (-)
BALB/cJ	MGP_BALBcJ_G0015498	unclassified non-coding RNA gene	Chr4:92435096-92457770 (-)
C3H/HeJ	MGP_C3HHeJ_G0015320	unclassified non-coding RNA gene	Chr4:95226425-95249395 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015951	unclassified non-coding RNA gene	Chr4:99188955-99213369 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013687	unclassified non-coding RNA gene	Chr4:87676456-87699062 (-)
CAST/EiJ	MGP_CASTEiJ_G0014875	unclassified non-coding RNA gene	Chr4:93068076-93092365 (-)
CBA/J	MGP_CBAJ_G0015301	unclassified non-coding RNA gene	Chr4:102217268-102244496 (-)
DBA/2J	MGP_DBA2J_G0015395	unclassified non-coding RNA gene	Chr4:91984386-92006939 (-)
FVB/NJ	MGP_FVBNJ_G0015402	unclassified non-coding RNA gene	Chr4:90837631-90861838 (-)
LP/J	MGP_LPJ_G0015475	unclassified non-coding RNA gene	Chr4:95863916-95890256 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015425	unclassified non-coding RNA gene	Chr4:107968178-107991902 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015993	unclassified non-coding RNA gene	Chr4:94680783-94703246 (-)
PWK/PhJ	MGP_PWKPhJ_G0014660	unclassified non-coding RNA gene	Chr4:90127180-90150559 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014449	unclassified non-coding RNA gene	Chr4:92087400-92112085 (-)
WSB/EiJ	MGP_WSBEiJ_G0014980	unclassified non-coding RNA gene	Chr4:94833738-94859411 (-)

Homology

• Gene Tree
  Gm830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm830
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000084939 (Evidence)
• NCBI Gene
  329892

Representative Sequences			Length	Strain/Species
genomic	329892	NCBI Gene Model | MGI Sequence Detail	20617	C57BL/6J
transcript	AK157456	GenBank | ENA | DDBJ | MGI Sequence Detail	3475	NOD

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Gm830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42463	Chr4:95375650-95375691 (-)	95 bp
Tssr42462	Chr4:95375618-95375635 (-)	139 bp