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A330043C09Rik Gene Detail
Summary
  • Symbol
    A330043C09Rik
  • Name
    RIKEN cDNA A330043C09 gene
  • Synonyms
    LOC329430
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2685671
    NCBI Gene: 329430
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr2:75147118-75177658 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 44.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    253 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685671
lncRNA gene Chr2:75147118-75177658 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005946
lincRNA gene Chr2:75498105-75528650 (-)
A/J MGP_AJ_G0005939
lincRNA gene Chr2:72533626-72564172 (-)
AKR/J MGP_AKRJ_G0005914
lincRNA gene Chr2:74498751-74529340 (-)
BALB/cJ MGP_BALBcJ_G0005917
lincRNA gene Chr2:72722415-72752950 (-)
C3H/HeJ MGP_C3HHeJ_G0005865
lincRNA gene Chr2:74713217-74743721 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006078
lincRNA gene Chr2:77744202-77774721 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005411
lincRNA gene Chr2:69965562-69996276 (-)
CAST/EiJ MGP_CASTEiJ_G0005801
lincRNA gene Chr2:75022325-75053710 (-)
CBA/J MGP_CBAJ_G0005850
lincRNA gene Chr2:80581159-80611663 (-)
DBA/2J MGP_DBA2J_G0005871
lincRNA gene Chr2:72141298-72172104 (-)
FVB/NJ MGP_FVBNJ_G0005896
lincRNA gene Chr2:71526761-71557284 (-)
LP/J MGP_LPJ_G0005950
lincRNA gene Chr2:75352561-75383106 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005884
lincRNA gene Chr2:82498249-82529515 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006075
lincRNA gene Chr2:74629094-74659631 (-)
PWK/PhJ MGP_PWKPhJ_G0005750
lincRNA gene Chr2:72080088-72111616 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005661
lincRNA gene Chr2:74852881-74886345 (-)
WSB/EiJ MGP_WSBEiJ_G0005854
lincRNA gene Chr2:75079936-75110453 (-)



Homology
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Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086044 Ensembl Gene Model | MGI Sequence Detail 30541 C57BL/6J ±  kb
transcript ENSMUST00000139823 Ensembl | MGI Sequence Detail 1009 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    Genomic 2
    cDNA 1
References
more
  • Summaries
    All 14
    Phenotypes 5
  • Earliest
    J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory