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Fndc3c1 Gene Detail
Summary
  • Symbol
    Fndc3c1
  • Name
    fibronectin type III domain containing 3C1
  • Synonyms
    LOC333564
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685630
    NCBI Gene: 333564
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:105463647-105529007 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 47.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    228 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685630
 protein coding gene ChrX:105463647-105529436 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036006
 protein coding gene ChrX:103243530-103317477 (-)
A/J MGP_AJ_G0035985
 protein coding gene ChrX:102971738-103127761 (-)
AKR/J MGP_AKRJ_G0035904
 protein coding gene ChrX:106100290-106406933 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0035682
 protein coding gene ChrX:103688153-103764569 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036502
 protein coding gene ChrX:106137308-106299826 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033330
 protein coding gene ChrX:100460485-100522457 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035657
 protein coding gene ChrX:109383654-109625582 (-)
DBA/2J MGP_DBA2J_G0035812
 protein coding gene ChrX:102307718-102381599 (-)
FVB/NJ MGP_FVBNJ_G0035752
 protein coding gene ChrX:101633260-101711970 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0035784
 protein coding gene ChrX:114117684-114318632 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036529
 protein coding gene ChrX:102863192-102937219 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    5
  • cDNA Data
    58
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033737 Ensembl Gene Model | MGI Sequence Detail 65361 C57BL/6J ±  kb
transcript ENSMUST00000039447 Ensembl | MGI Sequence Detail 4859 Not Applicable  
polypeptide ENSMUSP00000038678 Ensembl | MGI Sequence Detail 1356 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 61
    cDNA 58
    Primer pair 2
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:296151 Liu J, et al., Transcriptional analysis of cleft palate in TGFbeta3 mutant mice. Sci Rep. 2020 Sep 10;10(1):14940
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory