4930407I10Rik Gene Detail

Summary

• Symbol
  4930407I10Rik
• Name
  RIKEN cDNA 4930407I10 gene
• Synonyms
  LOC328573

• Feature Type
  protein coding gene
• IDs
  MGI:2685593
  NCBI Gene: 328573
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:82059151-82066538 bp, + strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685593	protein coding gene	Chr15:82059151-82066540 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022132	protein coding gene	Chr15:82543825-82551212 (+)
A/J	MGP_AJ_G0022092	protein coding gene	Chr15:79625450-79632827 (+)
AKR/J	MGP_AKRJ_G0022068	protein coding gene	Chr15:81824353-81831502 (+)
BALB/cJ	MGP_BALBcJ_G0022098	protein coding gene	Chr15:79670489-79677866 (+)
C3H/HeJ	MGP_C3HHeJ_G0021869	protein coding gene	Chr15:81847257-81854634 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022541	protein coding gene	Chr15:85771532-85778919 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020070	protein coding gene	Chr15:76062758-76069904 (+)
CAST/EiJ	MGP_CASTEiJ_G0021389	protein coding gene	Chr15:82639864-82647333 (+)
CBA/J	MGP_CBAJ_G0021834	protein coding gene	Chr15:88451748-88459125 (+)
DBA/2J	MGP_DBA2J_G0021962	protein coding gene	Chr15:79096554-79103931 (+)
FVB/NJ	MGP_FVBNJ_G0021939	protein coding gene	Chr15:78146950-78154327 (+)
LP/J	MGP_LPJ_G0022031	protein coding gene	Chr15:82689790-82697177 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021960	protein coding gene	Chr15:93375879-93383256 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022555	protein coding gene	Chr15:81933964-81941341 (+)
PWK/PhJ	MGP_PWKPhJ_G0021131	protein coding gene	Chr15:79144479-79152140 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020970	protein coding gene	Chr15:81723685-81731249 (+)
WSB/EiJ	MGP_WSBEiJ_G0021440	protein coding gene	Chr15:82354824-82362210 (+)

Homology

• Human Ortholog
  C22orf46, CTA-216E10.6

• Vertebrate Orthologs
  4

• Human Ortholog
  C22orf46, CTA-216E10.6
  Orthology source: HGNC
• Links
  HGNC:26294

  NCBI Gene ID: 79640

  neXtProt AC: NX_C9J442

  UniProt: C9J442

  
  
• Chr Location
  22q13.2; chr22:41688939-41698136 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 130065
  1 mouse;1 rat;1 cattle;1 dog
  
• HCOP
  human homology predictions: C22orf46
• Gene Tree
  4930407I10Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 4930407I10Rik
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  22 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  6

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 4930407I10Rik interacts with 48 markers (Mir15a, Mir24-1, Mir24-2, ...) View All

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3
• UniProt
  1
• CCDS
  CCDS49678.1
• UniGene
  399189

• Ensembl
  ENSMUSG00000075524 (Evidence)
• NCBI Gene
  328573

Representative Sequences			Length	Strain/Species
genomic	328573	NCBI Gene Model | MGI Sequence Detail	7388	C57BL/6J
transcript	NM_001166475	RefSeq | MGI Sequence Detail	4673	C57BL/6
polypeptide	NP_001159947	RefSeq | MGI Sequence Detail	1512	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR031715 Protein of unknown function DUF4727

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 35

  Diseases 1

  Phenotypes 19
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

TSS for 4930407I10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132343	Chr15:82059137-82059140 (+)	-12 bp
Tssr132344	Chr15:82059144-82059158 (+)	0 bp
Tssr132345	Chr15:82063903-82063908 (+)	4,755 bp