Rubcnl Gene Detail

Summary

• Symbol
  Rubcnl
• Name
  RUN and cysteine rich domain containing beclin 1 interacting protein like
• Synonyms
  5031414D18Rik, LOC380917

• Feature Type
  protein coding gene
• IDs
  MGI:2685590
  NCBI Gene: 271221
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr14:75016027-75052532 bp, + strand
• From Ensembl annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    36506 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 39.53 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  RUBCNL, RUN and cysteine rich domain containing beclin 1 interacting protein like

• Vertebrate Orthologs
  7

• Human Ortholog
  RUBCNL, RUN and cysteine rich domain containing beclin 1 interacting protein like
  Orthology source: HomoloGene, HGNC
• Synonyms
  C13orf18, KIAA0226L, PACER
• Links
  HGNC:20420

  NCBI Gene ID: 80183

  neXtProt AC: NX_Q9H714

  UniProt: Q9H714

  
  
• Chr Location
  13q14.13; chr13:46342000-46390042 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 57021
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken
  
• HCOP
  human homology predictions: RUBCNL
• Gene Tree
  Rubcnl
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  1 involving Rubcnl
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  23 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  11

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase rubcnl

Interactions

• Rubcnl interacts with 106 markers (Mir7-1, Mir15a, Mir15b, ...) View All

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  8
• UniProt
  4
• CCDS
  CCDS36977.1
• UniGene
  320280

• Ensembl
  ENSMUSG00000034959 (Evidence)
• NCBI Gene
  271221

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034959	Ensembl Gene Model | MGI Sequence Detail	36506	C57BL/6J
transcript	ENSMUST00000036072	Ensembl | MGI Sequence Detail	2651	Not Applicable
polypeptide	ENSMUSP00000045566	Ensembl | MGI Sequence Detail	675	Not Applicable

Polymorphisms

• SNPs within 2kb
  302 from dbSNP Build 142

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR025258 Putative zinc-RING and/or ribbon

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2685757

References

• Summaries
  All 18

  Phenotypes 5
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42