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Rubcnl Gene Detail
Summary
  • Symbol
    Rubcnl
  • Name
    RUN and cysteine rich domain containing beclin 1 interacting protein like
  • Synonyms
    5031414D18Rik, LOC380917
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685590
    NCBI Gene: 271221
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:75016027-75052532 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 39.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    302 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685590
 protein coding gene Chr14:75015968-75052537 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021565
 protein coding gene Chr14:69814761-69853172 (+)
A/J MGP_AJ_G0021523
 protein coding gene Chr14:68263700-68301639 (+)
AKR/J MGP_AKRJ_G0021500
 protein coding gene Chr14:70285022-70321529 (+)
BALB/cJ MGP_BALBcJ_G0021530
 protein coding gene Chr14:68062902-68099483 (+)
C3H/HeJ MGP_C3HHeJ_G0021307
 protein coding gene Chr14:70021298-70059394 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021970
 protein coding gene Chr14:72879544-72918557 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019508
 protein coding gene Chr14:65908252-65944984 (+)
CAST/EiJ MGP_CASTEiJ_G0020824
 protein coding gene Chr14:66680485-66721738 (+)
CBA/J MGP_CBAJ_G0021275
 protein coding gene Chr14:75208224-75250269 (+)
DBA/2J MGP_DBA2J_G0021398
 protein coding gene Chr14:67673942-67710868 (+)
FVB/NJ MGP_FVBNJ_G0021376
 protein coding gene Chr14:67004352-67040720 (+)
LP/J MGP_LPJ_G0021468
 protein coding gene Chr14:70975861-71015523 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021403
 protein coding gene Chr14:73997294-74033951 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021993
 protein coding gene Chr14:69579627-69616871 (+)
PWK/PhJ MGP_PWKPhJ_G0020567
 protein coding gene Chr14:64411093-64445658 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020403
 protein coding gene Chr14:65522189-65564535 (+)
WSB/EiJ MGP_WSBEiJ_G0020877
 protein coding gene Chr14:69912773-69950712 (+)



Homology
more
  • Human Ortholog
    RUBCNL, rubicon like autophagy enhancer
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RUBCNL, rubicon like autophagy enhancer
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C13orf18, KIAA0226L, PACER
  • Links
    NCBI Gene ID: 80183
    neXtProt AC: NX_Q9H714
    UniProt: Q9H714

  • Chr Location
    13q14.13; chr13:46342000-46390042 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    12
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034959 Ensembl Gene Model | MGI Sequence Detail 36506 C57BL/6J ±  kb
transcript ENSMUST00000036072 Ensembl | MGI Sequence Detail 2651 Not Applicable  
polypeptide ENSMUSP00000045566 Ensembl | MGI Sequence Detail 675 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR025258 Putative zinc-RING and/or ribbon
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685757
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:272052 Cheng X, et al., Pacer Is a Mediator of mTORC1 and GSK3-TIP60 Signaling in Regulation of Autophagosome Maturation and Lipid Metabolism. Mol Cell. 2019 Feb 21;73(4):788-802.e7
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/26/2019
MGI 6.14 		The Jackson Laboratory