About   Help   FAQ
Rubcnl Gene Detail
Summary
  • Symbol
    Rubcnl
  • Name
    RUN and cysteine rich domain containing beclin 1 interacting protein like
  • Synonyms
    5031414D18Rik, LOC380917
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685590
    NCBI Gene: 271221
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:75016027-75052532 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 39.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    302 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685590
protein coding gene Chr14:75015878-75052537 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021565
protein coding gene Chr14:69814761-69853172 (+)
A/J MGP_AJ_G0021523
protein coding gene Chr14:68263700-68301639 (+)
AKR/J MGP_AKRJ_G0021500
protein coding gene Chr14:70285022-70321529 (+)
BALB/cJ MGP_BALBcJ_G0021530
protein coding gene Chr14:68062902-68099483 (+)
C3H/HeJ MGP_C3HHeJ_G0021307
protein coding gene Chr14:70021298-70059394 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021970
protein coding gene Chr14:72879544-72918557 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019508
protein coding gene Chr14:65908252-65944984 (+)
CAST/EiJ MGP_CASTEiJ_G0020824
protein coding gene Chr14:66680485-66721738 (+)
CBA/J MGP_CBAJ_G0021275
protein coding gene Chr14:75208224-75250269 (+)
DBA/2J MGP_DBA2J_G0021398
protein coding gene Chr14:67673942-67710868 (+)
FVB/NJ MGP_FVBNJ_G0021376
protein coding gene Chr14:67004352-67040720 (+)
LP/J MGP_LPJ_G0021468
protein coding gene Chr14:70975861-71015523 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021403
protein coding gene Chr14:73997294-74033951 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021993
protein coding gene Chr14:69579627-69616871 (+)
PWK/PhJ MGP_PWKPhJ_G0020567
protein coding gene Chr14:64411093-64445658 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020403
protein coding gene Chr14:65522189-65564535 (+)
WSB/EiJ MGP_WSBEiJ_G0020877
protein coding gene Chr14:69912773-69950712 (+)



Homology
more
  • Human Ortholog
    RUBCNL, RUN and cysteine rich domain containing beclin 1 interacting protein like
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RUBCNL, RUN and cysteine rich domain containing beclin 1 interacting protein like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C13orf18, KIAA0226L, PACER
  • Links
    NCBI Gene ID: 80183
    neXtProt AC: NX_Q9H714
    UniProt: Q9H714

  • Chr Location
    13q14.13; chr13:46342000-46390042 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034959 Ensembl Gene Model | MGI Sequence Detail 36506 C57BL/6J ±  kb
transcript ENSMUST00000036072 Ensembl | MGI Sequence Detail 2651 Not Applicable  
polypeptide ENSMUSP00000045566 Ensembl | MGI Sequence Detail 675 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR025258 Putative zinc-RING and/or ribbon
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685757
References
more
  • Summaries
    All 19
    Phenotypes 5
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory