About   Help   FAQ
Nup62cl Gene Detail
Summary
  • Symbol
    Nup62cl
  • Name
    nucleoporin 62 C-terminal like
  • Synonyms
    LOC279706
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685565
    NCBI Gene: 279706
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:140006802-140062707 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 61.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    187 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685565
protein coding gene ChrX:140006802-140062712 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036131
protein coding gene ChrX:137532503-137588316 (-)
A/J MGP_AJ_G0036109
protein coding gene ChrX:136901669-136975524 (-)
AKR/J MGP_AKRJ_G0036034
protein coding gene ChrX:141304656-141360406 (-)
BALB/cJ MGP_BALBcJ_G0036099
protein coding gene ChrX:135244365-135302570 (-)
C3H/HeJ MGP_C3HHeJ_G0035808
protein coding gene ChrX:137555446-137611791 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036624
protein coding gene ChrX:141570713-141632565 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033448
protein coding gene ChrX:128648870-128705155 (-)
CAST/EiJ MGP_CASTEiJ_G0035099
protein coding gene ChrX:118360915-118417374 (-)
CBA/J MGP_CBAJ_G0035785
protein coding gene ChrX:145904680-145960361 (-)
DBA/2J MGP_DBA2J_G0035942
protein coding gene ChrX:136074556-136130529 (-)
FVB/NJ MGP_FVBNJ_G0035876
protein coding gene ChrX:135307120-135365151 (-)
LP/J MGP_LPJ_G0036033
protein coding gene ChrX:138494887-138549767 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035913
protein coding gene ChrX:153438111-153498413 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036660
protein coding gene ChrX:136844362-136901857 (-)
PWK/PhJ MGP_PWKPhJ_G0034792
protein coding gene ChrX:115275402-115332336 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034618
protein coding gene ChrX:118893782-118949271 (-)
WSB/EiJ MGP_WSBEiJ_G0035234
protein coding gene ChrX:135174042-135229302 (-)



Homology
more
  • Human Ortholog
    NUP62CL, nucleoporin 62 C-terminal like
  • Vertebrate Orthologs
    2
  • Human Ortholog
    NUP62CL, nucleoporin 62 C-terminal like
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 54830
    neXtProt AC: NX_Q9H1M0
    UniProt: Q9H1M0

  • Chr Location
    Xq22.3; chrX:107123427-107206440 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 279706 NCBI Gene Model | MGI Sequence Detail 55906 C57BL/6J ±  kb
transcript NM_001081668 RefSeq | MGI Sequence Detail 1144 C57BL/6  
polypeptide NP_001075137 RefSeq | MGI Sequence Detail 272 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR007758 Nucleoporin, NSP1-like, C-terminal
    IPR026010 Nucleoporin NSP1/NUP62
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
02/18/2020
MGI 6.14
The Jackson Laboratory