Pcdh19
Gene Detail

Symbol Name ID

Pcdh19 protocadherin 19 MGI:2685563

Synonyms

B530002L05Rik, LOC279653, mKIAA1313

Feature Type

protein coding gene

Genetic Map

Chromosome X

55.21 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

ChrX:133582876-133688987 bp, - strand From VEGA annotation of GRCm38   106112 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:18916  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Pcdh19

Human homologs

Human Homolog		PCDH19, protocadherin 19
NCBI Gene ID		57526
neXtProt AC		NX_Q8TAB3
Human Synonyms		EFMR, EIEE9
Human Chr (Location)		Xq22.1; chrX:99546642-99665271 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human PCDH19

Gene Ontology (GO) classifications

All GO classifications: (9 annotations)

Process	cell adhesion, homophilic cell adhesion
Component	integral to membrane, membrane, ...
Function	calcium ion binding

External Resources: FuncBase

Expression

Literature Summary: (6 records)
Data Summary: Results (98)    Tissues (82)    Images (27)
Theiler Stages: 11, 13, 14, 15, 17, 20, 23, 26

Assay Type	Results
RNA in situ	98

cDNA source data(33)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(34) cDNA(33) Primer pair(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000018675 (Evidence)
Ensembl Gene Model	ENSMUSG00000051323 (Evidence)
Entrez Gene	279653 (Evidence)
UniGene	39738
DFCI	TC1598312, TC1644381
DoTS	DT.40143719, DT.97371400
NIA Mouse Gene Index	U039691
Consensus CDS Project	CCDS41117.1, CCDS53181.1
International Mouse Knockout Project Status	Pcdh19

Sequences

Length	Strain/Species
genomic	OTTMUSG00000018675	VEGA Gene Model | MGI Sequence Detail	106112	C57BL/6J
transcript	OTTMUST00000044950	VEGA | MGI Sequence Detail	10273	Not Applicable
polypeptide	OTTMUSP00000020199	VEGA | MGI Sequence Detail	1145	Not Applicable

All sequences(34) RefSeq(4) UniProt(4)

Polymorphisms

SNPs(292 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR002126	Cadherin
InterPro	IPR020894	Cadherin conserved site
InterPro	IPR015919	Cadherin-like
InterPro	IPR013164	Cadherin, N-terminal
Protein Ontology	PR:000012349	protocadherin-19

References

(Earliest) J:83413 Okazaki N, et al., Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. DNA Res. 2003 Feb 28;10(1):35-48
(Latest) J:183823 Hertel N, et al., Absence of layer-specific cadherin expression profiles in the neocortex of the reeler mutant mouse. Cereb Cortex. 2011 May;21(5):1105-17
All references(28)