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Pcdh19 Gene Detail
Summary
  • Symbol
    Pcdh19
  • Name
    protocadherin 19
  • Synonyms
    B530002L05Rik, LOC279653, mKIAA1313
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685563
    NCBI Gene: 279653
Location & Maps
more
  • Sequence Map
    ChrX:133582860-133688987 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      106128 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    PCDH19, protocadherin 19
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCDH19, protocadherin 19
    Orthology source: HGNC, HomoloGene
  • Synonyms
    EFMR, EIEE9
  • Links
    NCBI Gene ID: 57526
    neXtProt AC: NX_Q8TAB3

  • Chr Location
    Xq22.1; chrX:100291644-100410273 (-)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human PCDH19 associations

Human Disease Mouse Models
       Epileptic Encephalopathy, Early Infantile, 9; EIEE9   OMIM: 300088
Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018675 VEGA Gene Model | MGI Sequence Detail 106128 C57BL/6J ±  kb
transcript OTTMUST00000044950 VEGA | MGI Sequence Detail 10289 Not Applicable  
polypeptide OTTMUSP00000020199 VEGA | MGI Sequence Detail 1145 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    324 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    cDNA 33
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 9
    Gene Ontology 2
  • Earliest
    J:83413 Okazaki N, et al., Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. DNA Res. 2003 Feb 28;10(1):35-48
  • Latest
    J:222248 Fossat N, et al., Context-specific function of the LIM homeobox 1 transcription factor in head formation of the mouse embryo. Development. 2015 Jun 1;142(11):2069-79

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/26/2016
MGI 6.03
The Jackson Laboratory