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Pcdh19
Gene Detail
 Symbol
Name
ID
Pcdh19
protocadherin 19
MGI:2685563
Synonyms B530002L05Rik, LOC279653, mKIAA1313
Feature Type protein coding gene
Genetic Map
Chromosome X
55.21 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:133582876-133688987 bp, - strand
From VEGA annotation of GRCm38

  106112 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18916  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Pcdh19

Human
homologs
Human Homolog PCDH19, protocadherin 19
NCBI Gene ID 57526
neXtProt AC  NX_Q8TAB3
Human Synonyms  EFMR, EIEE9
Human Chr (Location)  Xq22.1; chrX:100291644-100410273 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human PCDH19
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process cell adhesion, homophilic cell adhesion
Component integral component of membrane, membrane, ...
Function calcium ion binding
External Resources: FuncBase
Expression
Literature Summary: (8 records)
Data Summary: Results (98)    Tissues (82)    Images (27)
Theiler Stages: 11, 13, 14, 15, 17, 20, 23, 26
Assay TypeResults
RNA in situ 98
cDNA source data(33)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(34) cDNA(33) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000018675 (Evidence)
Ensembl Gene ModelENSMUSG00000051323 (Evidence)
Entrez Gene279653 (Evidence)
UniGene39738
DFCITC1598312, TC1644381
DoTSDT.40143719, DT.97371400
NIA Mouse Gene IndexU039691
Consensus CDS ProjectCCDS41117.1, CCDS53181.1
International Mouse Knockout Project StatusPcdh19
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018675 VEGA Gene Model | MGI Sequence Detail 106112 C57BL/6J ±  kb
transcript OTTMUST00000044950 VEGA | MGI Sequence Detail 10273 Not Applicable 
polypeptide OTTMUSP00000020199 VEGA | MGI Sequence Detail 1145 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(12) UniProt(4)
Polymorphisms SNPs within 2kb(324 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002126 Cadherin
InterPro IPR020894 Cadherin conserved site
InterPro IPR015919 Cadherin-like
InterPro IPR013164 Cadherin, N-terminal
Protein Ontology PR:000012349 protocadherin-19
References (Earliest) J:83413 Okazaki N, et al., Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. DNA Res. 2003 Feb 28;10(1):35-48
(Latest) J:202352 Boualia SK, et al., A core transcriptional network composed of Pax2/8, Gata3 and Lim1 regulates key players of pro/mesonephros morphogenesis. Dev Biol. 2013 Oct 15;382(2):555-66
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory