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Trav6d-4 Gene Detail
Summary
  • Symbol
    Trav6d-4
  • Name
    T cell receptor alpha variable 6D-4
  • Synonyms
    LOC193570, LOC277146
  • Feature Type
    gene segment
  • IDs
    MGI:2685547
    NCBI Gene: 277146
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:52753398-52753846 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685547
gene segment Chr14:52753367-52753846 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002528
gene segment Chr14:46800065-46800544 (+)
A/J MGP_AJ_G0002497
gene segment Chr14:45599388-45599867 (+)
AKR/J MGP_AKRJ_G0002487
gene segment Chr14:47252716-47253195 (+)
BALB/cJ MGP_BALBcJ_G0002494
gene segment Chr14:45692362-45692841 (+)
C3H/HeJ MGP_C3HHeJ_G0002469
gene segment Chr14:46992381-46992860 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0002525
gene segment Chr14:47448801-47449280 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002453
gene segment Chr14:49810311-49810790 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002617
gene segment Chr14:46583243-46583722 (+)
PWK/PhJ MGP_PWKPhJ_G0002414
gene segment Chr14:42112955-42113434 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 277146 NCBI Gene Model | MGI Sequence Detail 449 C57BL/6J ±  kb
polypeptide Q5R1I0 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
Other
Accession IDs
less
MGI:2684871
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory