Lkaaear1 Gene Detail

Summary

• Symbol
  Lkaaear1
• Name
  LKAAEAR motif containing 1 (IKAAEAR murine motif)
• Synonyms
  4930526D03Rik, LOC277496

• Feature Type
  protein coding gene
• IDs
  MGI:2685538
  NCBI Gene: 277496

Location & Maps

• Sequence Map
  Chr2:181696793-181698442 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    1650 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 103.73 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  LKAAEAR1, LKAAEAR motif containing 1

• Vertebrate Orthologs
  5

• Human Ortholog
  LKAAEAR1, LKAAEAR motif containing 1
  Orthology source: HomoloGene, HGNC
• Synonyms
  C20orf201
• Links
  HGNC:33718

  NCBI Gene ID: 198437

  neXtProt AC: NX_Q8TD35

  UniProt: Q8TD35

  
  
• Chr Location
  20q13.33; chr20:64083375-64084956 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 52380
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle
  
• HCOP
  human homology predictions: LKAAEAR1
• Gene Tree
  Lkaaear1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  APF
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  6

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Lkaaear1 interacts with 16 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  18
• UniProt
  2
• CCDS
  CCDS17221.1
• UniGene
  212749

• VEGA
  OTTMUSG00000016813 (Evidence)
• Ensembl
  ENSMUSG00000045794 (Evidence)
• NCBI Gene
  277496

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000016813	VEGA Gene Model | MGI Sequence Detail	1650	C57BL/6J
transcript	OTTMUST00000040840	VEGA | MGI Sequence Detail	718	Not Applicable
polypeptide	OTTMUSP00000018265	VEGA | MGI Sequence Detail	198	Not Applicable

Polymorphisms

• SNPs within 2kb
  18 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR029152 Protein of unknown function with LKAAEAR motif

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 1
• Earliest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86