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Vstm2l Gene Detail
Summary
  • Symbol
    Vstm2l
  • Name
    V-set and transmembrane domain containing 2-like
  • Synonyms
    LOC277432
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685537
    NCBI Gene: 277432
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:157914653-157944719 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 78.48 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685537
protein coding gene Chr2:157914653-157944719 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026786
protein coding gene Chr2:162949507-162982279 (+)
A/J MGP_AJ_G0026752
protein coding gene Chr2:156426506-156456489 (+)
AKR/J MGP_AKRJ_G0026723
protein coding gene Chr2:161046099-161077473 (+)
BALB/cJ MGP_BALBcJ_G0026761
protein coding gene Chr2:156732467-156762974 (+)
C3H/HeJ MGP_C3HHeJ_G0026503
protein coding gene Chr2:161349126-161380351 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027210
protein coding gene Chr2:167792293-167828760 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024580
protein coding gene Chr2:149871516-149900814 (+)
CAST/EiJ MGP_CASTEiJ_G0025965
protein coding gene Chr2:161707511-161741064 (+)
CBA/J MGP_CBAJ_G0026480
protein coding gene Chr2:173821757-173859428 (+)
DBA/2J MGP_DBA2J_G0026618
protein coding gene Chr2:155604428-155635062 (+)
FVB/NJ MGP_FVBNJ_G0026585
protein coding gene Chr2:154003978-154035375 (+)
LP/J MGP_LPJ_G0026721
protein coding gene Chr2:163036172-163067490 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026606
protein coding gene Chr2:177657263-177689827 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027266
protein coding gene Chr2:160853083-160884160 (+)
PWK/PhJ MGP_PWKPhJ_G0025699
protein coding gene Chr2:155120022-155151967 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025502
protein coding gene Chr2:159783136-159814513 (+)
WSB/EiJ MGP_WSBEiJ_G0026035
protein coding gene Chr2:161754556-161785534 (+)



Homology
more
  • Human Ortholog
    VSTM2L, V-set and transmembrane domain containing 2 like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VSTM2L, V-set and transmembrane domain containing 2 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf102, dJ1118M15.2
  • Links
    NCBI Gene ID: 128434
    neXtProt AC: NX_Q96N03
    UniProt: Q96N03

  • Chr Location
    20q11.23; chr20:37903097-37945350 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 15414
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: VSTM2L
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 277432 NCBI Gene Model | MGI Sequence Detail 30067 C57BL/6J ±  kb
transcript NM_198627 RefSeq | MGI Sequence Detail 1381 C57BL/6  
polypeptide Q6PDS0 UniProt | EBI | MGI Sequence Detail 220 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000030261 V-set and transmembrane domain-containing protein 2-like protein
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR013106 Immunoglobulin V-set domain
    IPR027115 V-set and transmembrane domain-containing protein 2-like protein
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory