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Colca2 Gene Detail
Summary
  • Symbol
    Colca2
  • Name
    COLCA2 homolog
  • Synonyms
    Gm684, LOC270157
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685530
    NCBI Gene: 100502940
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:51270258-51278565 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 28.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685530
protein coding gene Chr9:51270258-51279651 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034799
protein coding gene Chr9:50193930-50202211 (-)
A/J MGP_AJ_G0034780
protein coding gene Chr9:48667168-48675469 (-)
AKR/J MGP_AKRJ_G0034708
protein coding gene Chr9:49682080-49690376 (-)
BALB/cJ MGP_BALBcJ_G0034772
protein coding gene Chr9:48417406-48425707 (-)
C3H/HeJ MGP_C3HHeJ_G0034482
protein coding gene Chr9:50175235-50183536 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035292
protein coding gene Chr9:51602009-51610305 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032205
protein coding gene Chr9:48128484-48136788 (-)
CAST/EiJ MGP_CASTEiJ_G0033804
protein coding gene Chr9:50116281-50124627 (-)
CBA/J MGP_CBAJ_G0034454
protein coding gene Chr9:53419140-53427140 (-)
DBA/2J MGP_DBA2J_G0034613
protein coding gene Chr9:48523986-48532289 (-)
FVB/NJ MGP_FVBNJ_G0034554
protein coding gene Chr9:47740587-47748888 (-)
LP/J MGP_LPJ_G0034694
protein coding gene Chr9:50560505-50568784 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034597
protein coding gene Chr9:54995866-55004167 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035313
protein coding gene Chr9:49677600-49685924 (-)
PWK/PhJ MGP_PWKPhJ_G0033509
protein coding gene Chr9:48505797-48514095 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033344
protein coding gene Chr9:49969022-49977348 (-)
WSB/EiJ MGP_WSBEiJ_G0033917
protein coding gene Chr9:49680244-49688536 (-)



Homology
more
  • Human Ortholog
    COLCA2, colorectal cancer associated 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    COLCA2, colorectal cancer associated 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C11orf93, CASC13, LOH11CR1G
  • Links
    NCBI Gene ID: 120376
    neXtProt AC: NX_A8K830
    UniProt: A8K830

  • Chr Location
    11q23.1; chr11:111298517-111308735 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 100502940 NCBI Gene Model | MGI Sequence Detail 8308 C57BL/6J ±  kb
    transcript NM_001195681 RefSeq | MGI Sequence Detail 1263 C57BL/6  
    polypeptide NP_001182610 RefSeq | MGI Sequence Detail 239 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR043265 Colorectal cancer-associated protein 2
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4
    References
    more
    • Summaries
      All 17
      Gene Ontology 2
      Phenotypes 4
    • Earliest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.
    last database update
    11/10/2020
    MGI 6.16
    The Jackson Laboratory