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Colca2 Gene Detail
Summary
  • Symbol
    Colca2
  • Name
    COLCA2 homolog
  • Synonyms
    Gm684, LOC270157
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685530
    NCBI Gene: 100502940
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:51270258-51278569 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 28.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685530
protein coding gene Chr9:51270258-51278990 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034799
protein coding gene Chr9:50193930-50202211 (-)
A/J MGP_AJ_G0034780
protein coding gene Chr9:48667168-48675469 (-)
AKR/J MGP_AKRJ_G0034708
protein coding gene Chr9:49682080-49690376 (-)
BALB/cJ MGP_BALBcJ_G0034772
protein coding gene Chr9:48417406-48425707 (-)
C3H/HeJ MGP_C3HHeJ_G0034482
protein coding gene Chr9:50175235-50183536 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035292
protein coding gene Chr9:51602009-51610305 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032205
protein coding gene Chr9:48128484-48136788 (-)
CAST/EiJ MGP_CASTEiJ_G0033804
protein coding gene Chr9:50116281-50124627 (-)
CBA/J MGP_CBAJ_G0034454
protein coding gene Chr9:53419140-53427140 (-)
DBA/2J MGP_DBA2J_G0034613
protein coding gene Chr9:48523986-48532289 (-)
FVB/NJ MGP_FVBNJ_G0034554
protein coding gene Chr9:47740587-47748888 (-)
LP/J MGP_LPJ_G0034694
protein coding gene Chr9:50560505-50568784 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034597
protein coding gene Chr9:54995866-55004167 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035313
protein coding gene Chr9:49677600-49685924 (-)
PWK/PhJ MGP_PWKPhJ_G0033509
protein coding gene Chr9:48505797-48514095 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033344
protein coding gene Chr9:49969022-49977348 (-)
WSB/EiJ MGP_WSBEiJ_G0033917
protein coding gene Chr9:49680244-49688536 (-)



Homology
more
  • Human Ortholog
    COLCA2, colorectal cancer associated 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    COLCA2, colorectal cancer associated 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C11orf93, CASC13, LOH11CR1G
  • Links
    NCBI Gene ID: 120376
    neXtProt AC: NX_A8K830
    UniProt: A8K830

  • Chr Location
    11q23.1; chr11:111298517-111308735 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    18 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079559 Ensembl Gene Model | MGI Sequence Detail 8312 C57BL/6J ±  kb
transcript ENSMUST00000215038 Ensembl | MGI Sequence Detail 1269 Not Applicable  
polypeptide ENSMUSP00000150539 Ensembl | MGI Sequence Detail 239 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
References
more
  • Summaries
    All 16
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory