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Gm648 Gene Detail
Summary
  • Symbol
    Gm648
  • Name
    predicted gene 648
  • Synonyms
    LOC270599
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685494
    NCBI Gene: 270599
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:56543874-56549606 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 30.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    40 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685494
protein coding gene ChrX:56543873-56569162 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035737
protein coding gene ChrX:51834327-51839864 (-)
A/J MGP_AJ_G0035720
protein coding gene ChrX:52027545-52033277 (-)
AKR/J MGP_AKRJ_G0035640
protein coding gene ChrX:53409318-53415052 (-)
BALB/cJ MGP_BALBcJ_G0035707
protein coding gene ChrX:51496526-51502258 (-)
C3H/HeJ MGP_C3HHeJ_G0035409
protein coding gene ChrX:52372153-52378030 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036236
protein coding gene ChrX:53223996-53229886 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033087
protein coding gene ChrX:51478985-51484789 (-)
CAST/EiJ MGP_CASTEiJ_G0034702
protein coding gene ChrX:38261171-38266615 (-)
CBA/J MGP_CBAJ_G0035384
protein coding gene ChrX:54769193-54778221 (-)
DBA/2J MGP_DBA2J_G0035538
protein coding gene ChrX:51630699-51637071 (-)
FVB/NJ MGP_FVBNJ_G0035488
protein coding gene ChrX:51231144-51236859 (-)
LP/J MGP_LPJ_G0035626
protein coding gene ChrX:52429667-52435399 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035524
protein coding gene ChrX:56309179-56314714 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036252
protein coding gene ChrX:51869095-51874622 (-)
PWK/PhJ MGP_PWKPhJ_G0034398
protein coding gene ChrX:36535748-36541696 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034242
protein coding gene ChrX:38988554-38994169 (-)
WSB/EiJ MGP_WSBEiJ_G0034845
protein coding gene ChrX:51403527-51411515 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000064016 Ensembl Gene Model | MGI Sequence Detail 5733 C57BL/6J ±  kb
    transcript ENSMUST00000081133 Ensembl | MGI Sequence Detail 1040 Not Applicable  
    polypeptide ENSMUSP00000079908 Ensembl | MGI Sequence Detail 213 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • InterPro Domains
      IPR029307 INTS6/SAGE1/DDX26B/CT45, C-terminal
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 1
    References
    more
    • Summaries
      All 16
      Phenotypes 4
    • Earliest
      J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    07/29/2020
    MGI 6.15
    The Jackson Laboratory