Gm609 Gene Detail

Summary

• Symbol
  Gm609
• Name
  predicted gene 609
• Synonyms
  LOC208166, LOC385647

• Feature Type
  protein coding gene
• IDs
  MGI:2685455
  NCBI Gene: 208166
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:45412005-45493004 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 29.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  768 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685455	protein coding gene	Chr16:45411768-45493004 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022852	protein coding gene	Chr16:44206155-44274652 (-)
A/J	MGP_AJ_G0022817	protein coding gene	Chr16:42230813-42306056 (-)
AKR/J	MGP_AKRJ_G0022789	protein coding gene	Chr16:43613570-43695467 (-)
BALB/cJ	MGP_BALBcJ_G0022818	protein coding gene	Chr16:42251343-42327896 (-)
C3H/HeJ	MGP_C3HHeJ_G0022582	protein coding gene	Chr16:43780317-43842368 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023265	protein coding gene	Chr16:45200946-45278588 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020779	protein coding gene	Chr16:42615826-42670849 (-)
CAST/EiJ	MGP_CASTEiJ_G0022107	protein coding gene	Chr16:43959944-44040907 (-)
CBA/J	MGP_CBAJ_G0022553	protein coding gene	Chr16:47117768-47194147 (-)
DBA/2J	MGP_DBA2J_G0022685	protein coding gene	Chr16:41968270-42045181 (-)
FVB/NJ	MGP_FVBNJ_G0022661	protein coding gene	Chr16:41881239-41957356 (-)
LP/J	MGP_LPJ_G0022753	protein coding gene	Chr16:43938265-44021327 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022679	protein coding gene	Chr16:46538480-46620480 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023280	protein coding gene	Chr16:43630245-43704878 (-)
PWK/PhJ	MGP_PWKPhJ_G0021847	protein coding gene	Chr16:42336326-42408060 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021678	protein coding gene	Chr16:43558068-43607840 (-)
WSB/EiJ	MGP_WSBEiJ_G0022152	protein coding gene	Chr16:43718968-43798191 (-)

Homology

• HomoloGene
  Vertebrate Homology Class 86707
  2 mouse;2 rat
  
• Gene Tree
  Gm609
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  12 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Gm609 interacts with 202 markers (Mir7-1, Mir10a, Mir15a, ...) View All

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  8
• UniProt
  4
• CCDS
  CCDS28197.2
• UniGene
  451852

• Ensembl
  ENSMUSG00000053182 (Evidence)
• NCBI Gene
  208166

Representative Sequences			Length	Strain/Species
genomic	208166	NCBI Gene Model | MGI Sequence Detail	81000	C57BL/6J
transcript	NM_001005854	RefSeq | MGI Sequence Detail	2122	C57BL/6
polypeptide	NP_001005854	RefSeq | MGI Sequence Detail	300	C57BL/6

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR003599 Immunoglobulin subtype
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2686595

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm609:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141239	Chr16:45492962-45492993 (-)	26 bp
Tssr141238	Chr16:45492931-45492948 (-)	64 bp
Tssr141237	Chr16:45454932-45454974 (-)	38,051 bp
Tssr141236	Chr16:45454914-45454926 (-)	38,084 bp