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Rtp1 Gene Detail
Summary
  • Symbol
    Rtp1
  • Name
    receptor transporter protein 1
  • Synonyms
    LOC239766, LOC385871
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685450
    NCBI Gene: 239766
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr16:23429133-23433960 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 14.21 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    58 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685450
protein coding gene Chr16:23429133-23433960 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022683
protein coding gene Chr16:21012135-21016962 (+)
A/J MGP_AJ_G0022645
protein coding gene Chr16:20006753-20011580 (+)
AKR/J MGP_AKRJ_G0022619
protein coding gene Chr16:20862778-20867605 (+)
BALB/cJ MGP_BALBcJ_G0022650
protein coding gene Chr16:20204730-20209557 (+)
C3H/HeJ MGP_C3HHeJ_G0022414
protein coding gene Chr16:20974091-20978918 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023099
protein coding gene Chr16:21545124-21549951 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020617
protein coding gene Chr16:20645530-20650370 (+)
CAST/EiJ MGP_CASTEiJ_G0021943
protein coding gene Chr16:20966712-20971575 (+)
CBA/J MGP_CBAJ_G0022385
protein coding gene Chr16:22403811-22408638 (+)
DBA/2J MGP_DBA2J_G0022517
protein coding gene Chr16:19964456-19969283 (+)
FVB/NJ MGP_FVBNJ_G0022493
protein coding gene Chr16:19963253-19968080 (+)
LP/J MGP_LPJ_G0022585
protein coding gene Chr16:20800400-20805227 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022512
protein coding gene Chr16:21918325-21923152 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023111
protein coding gene Chr16:20810449-20815276 (+)
PWK/PhJ MGP_PWKPhJ_G0021682
protein coding gene Chr16:20237193-20242041 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021513
protein coding gene Chr16:20539135-20543993 (+)
WSB/EiJ MGP_WSBEiJ_G0021987
protein coding gene Chr16:20766984-20771811 (+)



Homology
more
  • Human Ortholog
    RTP1, receptor transporter protein 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RTP1, receptor transporter protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Z3CXXC1
  • Links
    NCBI Gene ID: 132112
    neXtProt AC: NX_P59025
    UniProt: P59025

  • Chr Location
    3q27.3; chr3:187197486-187201465 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit infertility and abnormal olfactory bulb development.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 239766 NCBI Gene Model | MGI Sequence Detail 4828 C57BL/6J ±  kb
transcript NM_001004151 RefSeq | MGI Sequence Detail 3120 C57BL/6  
polypeptide Q8C8C1 UniProt | EBI | MGI Sequence Detail 263 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
Other
Accession IDs
less
MGI:2686612
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
  • Latest
    J:240532 Sharma R, et al., Olfactory receptor accessory proteins play crucial roles in receptor function and gene choice. Elife. 2017 Mar 06;6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory