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Atg9b Gene Detail
Summary
  • Symbol
    Atg9b
  • Name
    autophagy related 9B
  • Synonyms
    Apg9l2, eONE, LOC213948, Nos3as
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685420
    NCBI Gene: 213948
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:24589179-24597141 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 11.49 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    450 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685420
 protein coding gene Chr5:24589179-24597141 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029339
 protein coding gene Chr5:22107433-22115392 (-)
A/J MGP_AJ_G0029305
 protein coding gene Chr5:21355932-21363893 (-)
AKR/J MGP_AKRJ_G0029256
 protein coding gene Chr5:22217238-22225200 (-)
BALB/cJ MGP_BALBcJ_G0029316
 protein coding gene Chr5:21869967-21878034 (-)
C3H/HeJ MGP_C3HHeJ_G0029036
 protein coding gene Chr5:22329628-22337630 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029769
 protein coding gene Chr5:23602157-23612405 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027007
 protein coding gene Chr5:19299366-19307328 (-)
CAST/EiJ MGP_CASTEiJ_G0028448
 protein coding gene Chr5:21503240-21511213 (-)
CBA/J MGP_CBAJ_G0029003
 protein coding gene Chr5:23976716-23984648 (-)
DBA/2J MGP_DBA2J_G0029154
 protein coding gene Chr5:21650117-21658396 (-)
FVB/NJ MGP_FVBNJ_G0029112
 protein coding gene Chr5:21018683-21026831 (-)
LP/J MGP_LPJ_G0029238
 protein coding gene Chr5:22505608-22513568 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029141
 protein coding gene Chr5:25111097-25119797 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029803
 protein coding gene Chr5:21856362-21864323 (-)
PWK/PhJ MGP_PWKPhJ_G0028172
 protein coding gene Chr5:20727750-20736049 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028003
 protein coding gene Chr5:21214774-21224616 (-)
WSB/EiJ MGP_WSBEiJ_G0028528
 protein coding gene Chr5:21923271-21932943 (-)



Homology
more
  • Human Ortholog
    ATG9B, autophagy related 9B
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATG9B, autophagy related 9B
  • Synonyms
    APG9L2, NOS3AS, SONE
  • Links
    NCBI Gene ID: 285973
    UniProt: Q674R7

  • Chr Location
    7q36.1; chr7:151012209-151024499 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    731
  • Tissues
    20
  • cDNA Data
    4
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 213948 NCBI Gene Model | MGI Sequence Detail 7963 C57BL/6J ±  kb
    transcript NM_001002897 RefSeq | MGI Sequence Detail 3902 Not Specified  
    polypeptide Q6EBV9 UniProt | EBI | MGI Sequence Detail 922 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 5
      cDNA 4
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 45
      Developmental Gene Expression 3
      Diseases 1
      Gene Ontology 2
      Phenotypes 19
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory