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Skint10 Gene Detail
Summary
  • Symbol
    Skint10
  • Name
    selection and upkeep of intraepithelial T cells 10
  • Synonyms
    A030001H23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685416
    NCBI Gene: 230613
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:112568344-112632063 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1294 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685416
 protein coding gene Chr4:112568027-112632063 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028585
 protein coding gene Chr4:113064832-113127800 (-)
A/J MGP_AJ_G0028548
 protein coding gene Chr4:108972540-109035413 (-)
AKR/J MGP_AKRJ_G0028495
 protein coding gene Chr4:111699921-111763780 (-)
BALB/cJ MGP_BALBcJ_G0028567
 protein coding gene Chr4:109681193-109747556 (-)
C3H/HeJ MGP_C3HHeJ_G0028281
 protein coding gene Chr4:112930227-112994049 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029010
 protein coding gene Chr4:117702393-117768395 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026298
 protein coding gene Chr4:104210766-104277687 (-)
CAST/EiJ MGP_CASTEiJ_G0027718
 protein coding gene Chr4:110294246-110364345 (-)
CBA/J MGP_CBAJ_G0028250
 protein coding gene Chr4:120967642-121039274 (-)
DBA/2J MGP_DBA2J_G0028398
 protein coding gene Chr4:109181199-109242281 (-)
FVB/NJ MGP_FVBNJ_G0028366
 protein coding gene Chr4:107944528-108003727 (-)
LP/J MGP_LPJ_G0028499
 protein coding gene Chr4:113349132-113422496 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028392
 protein coding gene Chr4:126423773-126516401 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029046
 protein coding gene Chr4:112439705-112512464 (-)
PWK/PhJ MGP_PWKPhJ_G0027443
 protein coding gene Chr4:106876864-106941303 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027267
 protein coding gene Chr4:109307328-109382386 (-)
WSB/EiJ MGP_WSBEiJ_G0027798
 protein coding gene Chr4:112189438-112255331 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    720
  • Tissues
    14
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048766 Ensembl Gene Model | MGI Sequence Detail 63720 C57BL/6J ±  kb
transcript ENSMUST00000060327 Ensembl | MGI Sequence Detail 1376 Not Applicable  
polypeptide ENSMUSP00000058838 Ensembl | MGI Sequence Detail 354 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory