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Atp13a3 Gene Detail
Summary
  • Symbol
    Atp13a3
  • Name
    ATPase type 13A3
  • Synonyms
    LOC224087, LOC224088, LOC385637
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685387
    NCBI Gene: 224088
  • Gene Overview
    MyGene.info: ATP13A3
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:30312423-30388860 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 21.26 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    317 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685387
protein coding gene Chr16:30312423-30405975 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022712
protein coding gene Chr16:28201892-28286968 (-)
A/J MGP_AJ_G0022675
protein coding gene Chr16:26906567-26985600 (-)
AKR/J MGP_AKRJ_G0022649
protein coding gene Chr16:27922864-28007342 (-)
BALB/cJ MGP_BALBcJ_G0022679
protein coding gene Chr16:27084555-27161440 (-)
C3H/HeJ MGP_C3HHeJ_G0022444
protein coding gene Chr16:28030407-28110964 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023128
protein coding gene Chr16:28810358-28895512 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020646
protein coding gene Chr16:27343590-27419592 (-)
CAST/EiJ MGP_CASTEiJ_G0021972
protein coding gene Chr16:28116327-28200314 (-)
CBA/J MGP_CBAJ_G0022414
protein coding gene Chr16:30023019-30111864 (-)
DBA/2J MGP_DBA2J_G0022547
protein coding gene Chr16:26786481-26863368 (-)
FVB/NJ MGP_FVBNJ_G0022522
protein coding gene Chr16:26758422-26841339 (-)
LP/J MGP_LPJ_G0022614
protein coding gene Chr16:28017257-28098733 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022541
protein coding gene Chr16:29551079-29631914 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023140
protein coding gene Chr16:27886126-27971850 (-)
PWK/PhJ MGP_PWKPhJ_G0021711
protein coding gene Chr16:27084602-27163373 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021542
protein coding gene Chr16:27650025-27726216 (-)
WSB/EiJ MGP_WSBEiJ_G0022016
protein coding gene Chr16:27836154-27915797 (-)



Homology
more
  • Human Ortholog
    ATP13A3, ATPase 13A3
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ATP13A3, ATPase 13A3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AFURS1
  • Links
    NCBI Gene ID: 79572
    neXtProt AC: NX_Q9H7F0
    UniProt: Q9H7F0

  • Chr Location
    3q29; chr3:194402674-194487006 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 224088 NCBI Gene Model | MGI Sequence Detail 76438 C57BL/6J ±  kb
transcript NM_001128096 RefSeq | MGI Sequence Detail 7310 Not Specified  
polypeptide Q5XF89 UniProt | EBI | MGI Sequence Detail 1219 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 5
Other
Accession IDs
less
MGI:2146569, MGI:2685388, MGI:2686591
References
more
  • Summaries
    All 27
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory