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Lypd9 Gene Detail
Summary
  • Symbol
    Lypd9
  • Name
    LY6/PLAUR domain containing 9
  • Synonyms
    4930504O13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685370
    NCBI Gene: 403200
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58446149-58452923 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 36.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685370
protein coding gene Chr11:58446143-58452966 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018354
protein coding gene Chr11:58178695-58185453 (-)
A/J MGP_AJ_G0018324
protein coding gene Chr11:55952504-55959252 (-)
AKR/J MGP_AKRJ_G0018293
protein coding gene Chr11:57775111-57781895 (-)
BALB/cJ MGP_BALBcJ_G0018295
protein coding gene Chr11:56289289-56296055 (-)
C3H/HeJ MGP_C3HHeJ_G0018106
protein coding gene Chr11:57721944-57728692 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018746
protein coding gene Chr11:59954121-59962191 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016396
protein coding gene Chr11:53284843-53292402 (-)
CAST/EiJ MGP_CASTEiJ_G0017671
protein coding gene Chr11:57816402-57823090 (-)
CBA/J MGP_CBAJ_G0018081
protein coding gene Chr11:62705883-62712641 (-)
DBA/2J MGP_DBA2J_G0018190
protein coding gene Chr11:55590309-55596970 (-)
FVB/NJ MGP_FVBNJ_G0018181
protein coding gene Chr11:55281477-55288219 (-)
LP/J MGP_LPJ_G0018265
protein coding gene Chr11:58701830-58708586 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018207
protein coding gene Chr11:63803358-63815445 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018789
protein coding gene Chr11:57836376-57843865 (-)
PWK/PhJ MGP_PWKPhJ_G0017443
protein coding gene Chr11:56210250-56217286 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017238
protein coding gene Chr11:57717182-57725050 (-)
WSB/EiJ MGP_WSBEiJ_G0017718
protein coding gene Chr11:57475505-57482957 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052642 Ensembl Gene Model | MGI Sequence Detail 6775 C57BL/6J ±  kb
transcript ENSMUST00000064614 Ensembl | MGI Sequence Detail 549 Not Applicable  
polypeptide ENSMUSP00000063665 Ensembl | MGI Sequence Detail 145 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/27/2018
MGI 6.13
The Jackson Laboratory