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Igsf9b Gene Detail
Summary
  • Symbol
    Igsf9b
  • Name
    immunoglobulin superfamily, member 9B
  • Synonyms
    LOC235086
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685354
    NCBI Gene: 235086
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:27299204-27357546 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 12.69 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    245 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685354
protein coding gene Chr9:27299090-27357549 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034508
protein coding gene Chr9:24781485-24833200 (+)
A/J MGP_AJ_G0034486
protein coding gene Chr9:24225355-24272113 (+)
AKR/J MGP_AKRJ_G0034412
protein coding gene Chr9:24700801-24751112 (+)
BALB/cJ MGP_BALBcJ_G0034477
protein coding gene Chr9:24103806-24152293 (+)
C3H/HeJ MGP_C3HHeJ_G0034189
protein coding gene Chr9:25082136-25130508 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034998
protein coding gene Chr9:25682725-25729672 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031928
protein coding gene Chr9:23129422-23176446 (+)
CAST/EiJ MGP_CASTEiJ_G0033512
protein coding gene Chr9:24883494-24938366 (+)
CBA/J MGP_CBAJ_G0034162
protein coding gene Chr9:26602345-26655187 (+)
DBA/2J MGP_DBA2J_G0034320
protein coding gene Chr9:24251105-24297376 (+)
FVB/NJ MGP_FVBNJ_G0034263
protein coding gene Chr9:23679455-23726723 (+)
LP/J MGP_LPJ_G0034406
protein coding gene Chr9:24976899-25029153 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034307
protein coding gene Chr9:28284911-28334045 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035018
protein coding gene Chr9:24699951-24749413 (+)
PWK/PhJ MGP_PWKPhJ_G0033217
protein coding gene Chr9:24157200-24209708 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033051
protein coding gene Chr9:24771371-24820266 (+)
WSB/EiJ MGP_WSBEiJ_G0033627
protein coding gene Chr9:24435606-24482683 (+)



Homology
more
  • Human Ortholog
    IGSF9B, immunoglobulin superfamily member 9B
  • Vertebrate Orthologs
    11
  • Human Ortholog
    IGSF9B, immunoglobulin superfamily member 9B
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 22997
    neXtProt AC: NX_Q9UPX0
    UniProt: Q9UPX0

  • Chr Location
    11q25; chr11:133908564-133956960 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 19472
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: IGSF9B
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034275 Ensembl Gene Model | MGI Sequence Detail 58343 C57BL/6J ±  kb
transcript ENSMUST00000214357 Ensembl | MGI Sequence Detail 16144 Not Applicable  
polypeptide ENSMUSP00000149356 Ensembl | MGI Sequence Detail 1441 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 37
    cDNA 37

    Microarray probesets 4
Other
Accession IDs
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MGI:2143033, MGI:2143160, MGI:3039571
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 11
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:268815 Babaev O, et al., IgSF9b regulates anxiety behaviors through effects on centromedial amygdala inhibitory synapses. Nat Commun. 2018 Dec 20;9(1):5400

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory