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Col28a1
Gene Detail
 Symbol
Name
ID
Col28a1
collagen, type XXVIII, alpha 1
MGI:2685312
Feature Type protein coding gene
Genetic Map
Chromosome 6
3.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:7997808-8192617 bp, - strand
From VEGA annotation of GRCm38

  194810 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:66345  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Col28a1

Human
homologs
Human Homolog COL28A1, collagen, type XXVIII, alpha 1
NCBI Gene ID 340267
neXtProt AC  NX_Q2UY09
Human Synonyms  COL28
Human Chr (Location)  7p21.3; chr7:7358613-7535829 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Col28a1 interacts with 137 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process cell adhesion, negative regulation of peptidase activity
Component basement membrane, collagen trimer, ...
Function peptidase inhibitor activity, serine-type endopeptidase inhibitor activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(1) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000022693 (Evidence)
Ensembl Gene ModelENSMUSG00000068794 (Evidence)
Entrez Gene213945 (Evidence)
UniGene297404
DoTSDT.103575871, DT.110474175
NIA Mouse Gene IndexU142185
Consensus CDS ProjectCCDS39424.1
International Mouse Knockout Project StatusCol28a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022693 VEGA Gene Model | MGI Sequence Detail 194810 C57BL/6J ±  kb
transcript OTTMUST00000054427 VEGA | MGI Sequence Detail 4230 Not Applicable 
polypeptide OTTMUSP00000025976 VEGA | MGI Sequence Detail 1141 Not Applicable 

For the selected sequences
All sequences(29) RefSeq(10) UniProt(1)
Polymorphisms SNPs within 2kb(2397 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR020901 Proteinase inhibitor I2, Kunitz, conserved site
InterPro IPR002223 Proteinase inhibitor I2, Kunitz metazoa
InterPro IPR002035 von Willebrand factor, type A
Protein Ontology PR:000005711 collagen alpha-1(XXVIII) chain
References (Earliest) J:108496 Veit G, et al., Collagen XXVIII, a novel von Willebrand factor A domain-containing protein with many imperfections in the collagenous domain. J Biol Chem. 2006 Feb 10;281(6):3494-504
(Latest) J:167409 Grimal S, et al., Collagen XXVIII is a distinctive component of the peripheral nervous system nodes of ranvier and surrounds nonmyelinating glial cells. Glia. 2010 Dec;58(16):1977-87
All references(23)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory