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Col28a1
Gene Detail
Symbol

Name
ID
Col28a1
collagen, type XXVIII, alpha 1
MGI:2685312
Feature Type
protein coding gene
Genetic Map
Chromosome 6
3.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:7997808-8192617 bp, - strand
From VEGA annotation of GRCm38

  194810 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:66345  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COL28A1
Gene Tree: Col28a1

Human
homologs
COL28A1, collagen, type XXVIII, alpha 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 340267
neXtProt AC: NX_Q2UY09

Human Synonyms: COL28

Human Chr (Location): 7p21.3; chr7:7338549-7537277 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Col28a1 interacts with 137 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase col28a1    NEW 
Molecular
reagents
All nucleic(1) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000022693 (Evidence)
Ensembl Gene Model ENSMUSG00000068794 (Evidence)
Entrez Gene 213945 (Evidence)
UniGene 297404
DoTS DT.103575871, DT.110474175
NIA Mouse Gene Index U142185
Consensus CDS Project CCDS39424.1
International Mouse Phenotyping Consortium Status Col28a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022693 VEGA Gene Model | MGI Sequence Detail 194810 C57BL/6J ±  kb
transcript OTTMUST00000054427 VEGA | MGI Sequence Detail 4230 Not Applicable 
polypeptide OTTMUSP00000025976 VEGA | MGI Sequence Detail 1141 Not Applicable 

For the selected sequences
All sequences(29) RefSeq(10) UniProt(1)
Polymorphisms
SNPs within 2kb(2397 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR020901 Proteinase inhibitor I2, Kunitz, conserved site
InterPro IPR002223 Proteinase inhibitor I2, Kunitz metazoa
InterPro IPR002035 von Willebrand factor, type A
Protein Ontology PR:000005711 collagen alpha-1(XXVIII) chain
References
(Earliest) J:108496 Veit G, et al., Collagen XXVIII, a novel von Willebrand factor A domain-containing protein with many imperfections in the collagenous domain. J Biol Chem. 2006 Feb 10;281(6):3494-504
(Latest) J:167409 Grimal S, et al., Collagen XXVIII is a distinctive component of the peripheral nervous system nodes of ranvier and surrounds nonmyelinating glial cells. Glia. 2010 Dec;58(16):1977-87
All references(22)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory