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Col28a1 Gene Detail
Summary
  • Symbol
    Col28a1
  • Name
    collagen, type XXVIII, alpha 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685312
    NCBI Gene: 213945
  • Gene Overview
    MyGene.info: COL28A1
Location & Maps
more
  • Sequence Map
    Chr6:7997808-8192617 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      194810 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 3.44 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    COL28A1, collagen type XXVIII alpha 1 chain
  • Vertebrate Orthologs
    8
  • Human Ortholog
    COL28A1, collagen type XXVIII alpha 1 chain
    Orthology source: HGNC, HomoloGene
  • Synonyms
    COL28
  • Links
    NCBI Gene ID: 340267
    neXtProt AC: NX_Q2UY09

  • Chr Location
    7p21.3; chr7:7338549-7537277 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022693 VEGA Gene Model | MGI Sequence Detail 194810 C57BL/6J ±  kb
transcript OTTMUST00000054427 VEGA | MGI Sequence Detail 4230 Not Applicable  
polypeptide OTTMUSP00000025976 VEGA | MGI Sequence Detail 1141 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    2372 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000005711 collagen alpha-1(XXVIII) chain
  • InterPro Domains
    IPR008160 Collagen triple helix repeat
    IPR002223 Pancreatic trypsin inhibitor Kunitz domain
    IPR020901 Proteinase inhibitor I2, Kunitz, conserved site
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
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  • All nucleic 1
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:108496 Veit G, et al., Collagen XXVIII, a novel von Willebrand factor A domain-containing protein with many imperfections in the collagenous domain. J Biol Chem. 2006 Feb 10;281(6):3494-504
  • Latest
    J:167409 Grimal S, et al., Collagen XXVIII is a distinctive component of the peripheral nervous system nodes of ranvier and surrounds nonmyelinating glial cells. Glia. 2010 Dec;58(16):1977-87

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory