About   Help   FAQ
H1fx
Gene Detail
 Symbol
Name
ID
H1fx
H1 histone family, member X
MGI:2685307
Synonyms H1X, LOC243529
Feature Type protein coding gene
Genetic Map
Chromosome 6
39.13 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:87980421-87981637 bp, - strand
From VEGA annotation of GRCm38

  1217 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4397  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: histone H1
Gene Tree: H1fx

Human
homologs
Human Homolog H1FX, H1 histone family, member X
NCBI Gene ID 8971
neXtProt AC  NX_Q92522
Human Synonyms  H1X
Human Chr (Location)  3q21.3; chr3:129314771-129316277 (-)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Gene trapped(1) Targeted(2)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process biological_process
Component chromosome, nucleolus, ...
Function DNA binding, poly(A) RNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (178)    Tissues (19)    Images (33)
Theiler Stages: 11, 13, 23
Assay TypeResults
RNA in situ 178
cDNA source data(1)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(1) cDNA(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000024647 (Evidence)
Ensembl Gene ModelENSMUSG00000044927 (Evidence)
Entrez Gene243529 (Evidence)
NIA Mouse Gene IndexU027588
Consensus CDS ProjectCCDS20331.1
International Mouse Knockout Project StatusH1fx
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024647 VEGA Gene Model | MGI Sequence Detail 1217 C57BL/6J ±  kb
transcript OTTMUST00000060595 VEGA | MGI Sequence Detail 1217 Not Applicable 
polypeptide OTTMUSP00000029567 VEGA | MGI Sequence Detail 188 Not Applicable 

For the selected sequences
All sequences(13) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(4 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005818 Histone H1/H5
InterPro IPR005819 Histone H5
InterPro IPR011991 Winged helix-turn-helix DNA-binding domain
Protein Ontology PR:000008408 histone H1x
References (Earliest) J:141291 Tamplin OJ, et al., Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics. 2008;9(1):511
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(26)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/15/2014
MGI 5.18
The Jackson Laboratory