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H1fx
Gene Detail
Symbol

Name
ID
H1fx
H1 histone family, member X
MGI:2685307
Synonyms
H1X, LOC243529
Feature Type
protein coding gene
Genetic Map
Chromosome 6
39.13 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:87980421-87981637 bp, - strand
From VEGA annotation of GRCm38

  1217 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4397  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: H1FX
Protein SuperFamily: histone H1
Gene Tree: H1fx

Human
homologs
H1FX, H1 histone family, member X
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8971
neXtProt AC: NX_Q92522

Human Synonyms: H1.10, H1X

Human Chr (Location): 3q21.3; chr3:129314771-129316277 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Spontaneous(1) Targeted(2)
Genomic Mutations involving H1fx (1)
Interactions
H1fx interacts with 22 markers (Mir25, Mir92-1, Mir135a-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component nucleolus, nucleus
Function poly(A) RNA binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (178)    Tissues (19)    Images (33)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 178
cDNA source data(1)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase h1fx ; ZFIN h1fx    NEW 
Molecular
reagents
All nucleic(1) cDNA(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000024647 (Evidence)
Ensembl Gene Model ENSMUSG00000044927 (Evidence)
Entrez Gene 243529 (Evidence)
NIA Mouse Gene Index U027588
Consensus CDS Project CCDS20331.1
International Mouse Phenotyping Consortium Status H1fx
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024647 VEGA Gene Model | MGI Sequence Detail 1217 C57BL/6J ±  kb
transcript OTTMUST00000060595 VEGA | MGI Sequence Detail 1217 Not Applicable 
polypeptide OTTMUSP00000029567 VEGA | MGI Sequence Detail 188 Not Applicable 

For the selected sequences
All sequences(13) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(4 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005818 Histone H1/H5
InterPro IPR005819 Histone H5
InterPro IPR011991 Winged helix-turn-helix DNA-binding domain
Protein Ontology PR:000008408 histone H1x
References
(Earliest) J:141291 Tamplin OJ, et al., Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics. 2008;9(1):511
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory