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Slc10a5
Gene Detail
 Symbol
Name
ID
Slc10a5
solute carrier family 10 (sodium/bile acid cotransporter family), member 5
MGI:2685251
Synonyms LOC241877
Feature Type protein coding gene
Genetic Map
Chromosome 3
2.62 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr3:10331734-10335656 bp, - strand
From NCBI annotation of GRCm38

  3923 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:78106  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle

Protein SuperFamily: sodium-dependent transporter
Gene Tree: Slc10a5

Human
homologs
Human Homolog SLC10A5, solute carrier family 10, member 5
NCBI Gene ID 347051
neXtProt AC  NX_Q5PT55
Human Synonyms  P5
Human Chr (Location)  8q21.13; chr8:81693656-81694972 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Gene trapped(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc10a5 interacts with 348 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process ion transport, sodium ion transport, ...
Component integral component of membrane, membrane
Function bile acid:sodium symporter activity, symporter activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (95)    Tissues (95)    Images (1)
Theiler Stages: 22, 23
Assay TypeResults
RNA in situ 95
cDNA source data(4)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(4) Primer pair(1)
Microarray probesets(1)
Other database
links
Ensembl Gene ModelENSMUSG00000058921 (Evidence)
Entrez Gene241877 (Evidence)
UniGene442146
DoTSDT.97397270
NIA Mouse Gene IndexU165223
Consensus CDS ProjectCCDS17241.1
International Mouse Knockout Project StatusSlc10a5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 241877 NCBI Gene Model | MGI Sequence Detail 3923 C57BL/6J ±  kb
transcript NM_001010834 RefSeq | MGI Sequence Detail 3923 C57BL/6 
polypeptide Q5PT54 UniProt | EBI | MGI Sequence Detail 434 Not Applicable 

For the selected sequences
All sequences(12) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(104 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002657 Bile acid:sodium symporter
Protein Ontology PR:000014921 sodium/bile acid cotransporter 5
Graphical View of Protein Domain Structure
References (Earliest) J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(21)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory