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Rtl9 Gene Detail
Summary
  • Symbol
    Rtl9
  • Name
    retrotransposon Gag like 9
  • Synonyms
    Mar9, Mart9, Rgag1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685231
    NCBI Gene: 209540
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrX:143099594-143104297 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 64.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685231
protein coding gene ChrX:143058276-143105330 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036153
protein coding gene ChrX:140634655-140639354 (+)
A/J MGP_AJ_G0036130
protein coding gene ChrX:140012265-140016934 (+)
AKR/J MGP_AKRJ_G0036056
protein coding gene ChrX:144505524-144510235 (+)
BALB/cJ MGP_BALBcJ_G0036121
protein coding gene ChrX:138235104-138239815 (+)
C3H/HeJ MGP_C3HHeJ_G0035829
protein coding gene ChrX:140735287-140739990 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036644
protein coding gene ChrX:144636731-144641434 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033468
protein coding gene ChrX:131544825-131549484 (+)
CAST/EiJ MGP_CASTEiJ_G0035120
protein coding gene ChrX:121436004-121440681 (+)
CBA/J MGP_CBAJ_G0035806
protein coding gene ChrX:149180765-149185468 (+)
DBA/2J MGP_DBA2J_G0035964
protein coding gene ChrX:139093724-139098427 (+)
FVB/NJ MGP_FVBNJ_G0035898
protein coding gene ChrX:138296814-138301527 (+)
LP/J MGP_LPJ_G0036055
protein coding gene ChrX:141591654-141596357 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035934
protein coding gene ChrX:156809262-156813959 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036681
protein coding gene ChrX:139934972-139939675 (+)
PWK/PhJ MGP_PWKPhJ_G0034814
protein coding gene ChrX:118237995-118242749 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034639
protein coding gene ChrX:121968382-121973029 (+)
WSB/EiJ MGP_WSBEiJ_G0035255
protein coding gene ChrX:138308600-138313347 (+)



Homology
more
  • Human Ortholog
    RTL9, retrotransposon Gag like 9
  • Vertebrate Orthologs
    6
  • Human Ortholog
    RTL9, retrotransposon Gag like 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MAR9, MART9, RGAG1, SIRH10
  • Links
    NCBI Gene ID: 57529
    neXtProt AC: NX_Q8NET4
    UniProt: Q8NET4

  • Chr Location
    Xq23; chrX:110358101-110456334 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085584 Ensembl Gene Model | MGI Sequence Detail 4704 C57BL/6J ±  kb
transcript ENSMUST00000165829 Ensembl | MGI Sequence Detail 4104 Not Applicable  
polypeptide ENSMUSP00000128287 Ensembl | MGI Sequence Detail 1367 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR042919 Retrotransposon Gag-like protein 9
Molecular
Reagents
less
  • All nucleic 4
    cDNA 3
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Developmental Gene Expression 1
  • Earliest
    J:96508 Brandt J, et al., Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene. 2005 Jan 17;345(1):101-11
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory