Gm371 Pseudogene Detail

Summary

• Symbol
  Gm371
• Name
  predicted pseudogene 371
• Synonyms
  LOC236914

• Feature Type
  pseudogene
• IDs
  MGI:2685217
  NCBI Gene: 236914
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:94041045-94042289 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685217	pseudogene	ChrX:94041000-94042523 (-)
129S1/SvImJ	ENSMUSG00200038641	pseudogene	ChrX:75722216-75723460 (-)
A/J	ENSMUSG00195031871	pseudogene	ChrX:79516968-79518212 (-)
AKR/J	ENSMUSG00220030309	pseudogene	ChrX:74249479-74250723 (-)
BALB/cJ	ENSMUSG00180022751	pseudogene	ChrX:76188303-76189547 (-)
C3H/HeJ	ENSMUSG00175019202	pseudogene	ChrX:79883649-79884893 (-)
C57BL/6NJ	ENSMUSG00215020198	pseudogene	ChrX:76405651-76406895 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012774	pseudogene	ChrX:89651995-89653239 (-)
CAST/EiJ	ENSTCUG00005028858	pseudogene	ChrX:77423526-77424770 (-)
CBA/J	ENSMUSG00210035690	pseudogene	ChrX:76623278-76624522 (-)
DBA/2J	ENSMUSG00185032325	pseudogene	ChrX:89102058-89103302 (-)
FVB/NJ	ENSMUSG00205026456	pseudogene	ChrX:75872862-75874106 (-)
JF1/MsJ	ENSUMUG00000023783	pseudogene	ChrX:109753288-109754532 (-)
LP/J	ENSMUSG00230013829	pseudogene	ChrX:95796741-95797985 (-)
NOD/ShiLtJ	ENSMUSG00190018558	pseudogene	ChrX:75770188-75771432 (-)
NZO/HlLtJ	ENSMUSG00225045633	pseudogene	ChrX:100927013-100928257 (-)
PWK/PhJ	ENSLUMG00010039271	pseudogene	ChrX:75060189-75061433 (-)
SPRET/EiJ	ENSMSPG00010034577	pseudogene	ChrX:79144642-79145886 (-)
WSB/EiJ	ENSIUOG00005042826	pseudogene	ChrX:76379690-76380934 (-)

Homology

• Gene Tree
  Gm371
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000087522 (Evidence)
• NCBI Gene
  236914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087522	Ensembl Gene Model | MGI Sequence Detail	1245	C57BL/6J
transcript	ENSMUST00000142240	Ensembl | MGI Sequence Detail	1245	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm371:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163795	ChrX:94042613-94042624 (-)	-330 bp