About   Help   FAQ
Ldoc1
Gene Detail
 Symbol
Name
ID
Ldoc1
leucine zipper, down-regulated in cancer 1
MGI:2685212
Synonyms LOC245441, Mar7, Mart7
Feature Type protein coding gene
Genetic Map
Chromosome X
34.57 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:61709497-61710955 bp, + strand
From VEGA annotation of GRCm38

  1459 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32153  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Ldoc1

Human
homologs
Human Homolog LDOC1, leucine zipper, down-regulated in cancer 1
NCBI Gene ID 23641
neXtProt AC  NX_O95751
Human Synonyms  BCUR1, Mar7, Mart7
Human Chr (Location)  Xq27; chrX:141175745-141177214 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from APF )
Interactions
Ldoc1 interacts with 168 markers (Mir1a-1, Mir1a-2, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component nucleus
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (30)    Tissues (19)   
Theiler Stages: 22, 28
Assay TypeResults
RT-PCR 30
cDNA source data(18)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(18) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000017589 (Evidence)
Ensembl Gene ModelENSMUSG00000057615 (Evidence)
Entrez Gene434784 (Evidence)
UniGene23468
DFCITC1584735
DoTSDT.60103365
Consensus CDS ProjectCCDS30163.1
International Mouse Knockout Project StatusLdoc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017589 VEGA Gene Model | MGI Sequence Detail 1459 C57BL/6J ±  kb
transcript OTTMUST00000042760 VEGA | MGI Sequence Detail 1459 Not Applicable 
polypeptide OTTMUSP00000019208 VEGA | MGI Sequence Detail 151 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(5 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000009746 protein LDOC1
References (Earliest) J:96508 Brandt J, et al., Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene. 2005 Jan 17;345(1):101-11
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/12/2014
MGI 5.19
The Jackson Laboratory