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Lrrc30 Gene Detail
Summary
  • Symbol
    Lrrc30
  • Name
    leucine rich repeat containing 30
  • Synonyms
    LOC240131
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685172
    NCBI Gene: 240131
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:67630965-67632723 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 38.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685172
protein coding gene Chr17:67630964-67632723 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023991
protein coding gene Chr17:69913612-69915370 (-)
A/J MGP_AJ_G0023949
protein coding gene Chr17:67794295-67796053 (-)
AKR/J MGP_AKRJ_G0023918
protein coding gene Chr17:68740121-68741879 (-)
BALB/cJ MGP_BALBcJ_G0023950
protein coding gene Chr17:67748054-67749812 (-)
C3H/HeJ MGP_C3HHeJ_G0023714
protein coding gene Chr17:69646699-69648457 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024396
protein coding gene Chr17:72527945-72529703 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021842
protein coding gene Chr17:63739187-63740941 (-)
CAST/EiJ MGP_CASTEiJ_G0023196
protein coding gene Chr17:70010820-70012577 (-)
CBA/J MGP_CBAJ_G0023690
protein coding gene Chr17:75438044-75439802 (-)
DBA/2J MGP_DBA2J_G0023818
protein coding gene Chr17:66506511-66508269 (-)
FVB/NJ MGP_FVBNJ_G0023784
protein coding gene Chr17:66005745-66007503 (-)
LP/J MGP_LPJ_G0023900
protein coding gene Chr17:70635685-70637443 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023812
protein coding gene Chr17:75451550-75453308 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024440
protein coding gene Chr17:69196646-69198404 (-)
PWK/PhJ MGP_PWKPhJ_G0022942
protein coding gene Chr17:65827309-65829066 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022753
protein coding gene Chr17:65928141-65929902 (-)
WSB/EiJ MGP_WSBEiJ_G0023262
protein coding gene Chr17:69942863-69944621 (-)



Homology
more
  • Human Ortholog
    LRRC30, leucine rich repeat containing 30
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRRC30, leucine rich repeat containing 30
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 339291
    neXtProt AC: NX_A6NM36
    UniProt: A6NM36

  • Chr Location
    18p11.23; chr18:7231139-7232044 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 33184
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRRC30
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 240131 NCBI Gene Model | MGI Sequence Detail 1759 C57BL/6J ±  kb
transcript NM_001033340 RefSeq | MGI Sequence Detail 1759 C57BL/6  
polypeptide Q3UV48 UniProt | EBI | MGI Sequence Detail 300 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory