A930017M01Rik Pseudogene Detail

Summary

• Symbol
  A930017M01Rik
• Name
  RIKEN cDNA A930017M01 gene

• Feature Type
  pseudogene
• IDs
  MGI:2685151
  NCBI Gene: 239410
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:44744815-44747698 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 17.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685151	pseudogene	Chr15:44744790-44748139 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036405	pseudogene	Chr15:43494872-43496547 (+)
A/J	MGP_AJ_G0036389	pseudogene	Chr15:41846877-41848552 (+)
AKR/J	MGP_AKRJ_G0036340	pseudogene	Chr15:43072849-43074524 (+)
BALB/cJ	MGP_BALBcJ_G0036382	pseudogene	Chr15:41917921-41919596 (+)
C3H/HeJ	MGP_C3HHeJ_G0036076	pseudogene	Chr15:42999277-43000952 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036891	pseudogene	Chr15:45183682-45185357 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034005	pseudogene	Chr15:39358441-39360116 (+)
CAST/EiJ	MGP_CASTEiJ_G0035273	pseudogene	Chr15:43507573-43509248 (+)
CBA/J	MGP_CBAJ_G0036048	pseudogene	Chr15:46732946-46734621 (+)
DBA/2J	MGP_DBA2J_G0036221	pseudogene	Chr15:41655232-41656907 (+)
FVB/NJ	MGP_FVBNJ_G0036175	pseudogene	Chr15:40953019-40954694 (+)
LP/J	MGP_LPJ_G0036274	pseudogene	Chr15:43267524-43269199 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036178	pseudogene	Chr15:50166493-50168168 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037000	pseudogene	Chr15:43267542-43269217 (+)
PWK/PhJ	MGP_PWKPhJ_G0034972	pseudogene	Chr15:41694515-41696190 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034789	pseudogene	Chr15:42943886-42945561 (+)
WSB/EiJ	MGP_WSBEiJ_G0035464	pseudogene	Chr15:43168972-43170647 (+)

Homology

• Gene Tree
  A930017M01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A930017M01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000060530 (Evidence)
• NCBI Gene
  239410

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060530	Ensembl Gene Model | MGI Sequence Detail	2884	C57BL/6J
transcript	ENSMUST00000081361	Ensembl | MGI Sequence Detail	2884	Not Applicable
polypeptide	Q8C4W1	UniProt | EBI | MGI Sequence Detail	558	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR018834 DNA/RNA-binding domain, Est1-type
  IPR045153 Est1/Ebs1-like
  IPR019458 Telomerase activating protein Est1-like, N-terminal
  IPR011990 Tetratricopeptide-like helical domain superfamily

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86