Samd15 Gene Detail

Summary

• Symbol
  Samd15
• Name
  sterile alpha motif domain containing 15
• Synonyms
  Gm263, LOC238333

• Feature Type
  protein coding gene
• IDs
  MGI:2685109
  NCBI Gene: 238333
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr12:87199723-87213541 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    13819 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 41.40 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  SAMD15, sterile alpha motif domain containing 15

• Vertebrate Orthologs
  7

• Human Ortholog
  SAMD15, sterile alpha motif domain containing 15
  Orthology source: HomoloGene, HGNC
• Synonyms
  C14orf174, FAM15A
• Links
  HGNC:18631

  NCBI Gene ID: 161394

  neXtProt AC: NX_Q9P1V8

  UniProt: Q9P1V8

  
  
• Chr Location
  14q24.3; chr14:77377419-77391244 (+)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 52875
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: SAMD15
• Gene Tree
  Samd15
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  11
• Genomic Mutations
  1 involving Samd15
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  1

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  6
• UniProt
  2
• CCDS
  CCDS70409.1
• UniGene
  302304

• VEGA
  OTTMUSG00000043613 (Evidence)
• Ensembl
  ENSMUSG00000090812 (Evidence)
• NCBI Gene
  238333

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000043613	VEGA Gene Model | MGI Sequence Detail	13819	C57BL/6J
transcript	OTTMUST00000114538	VEGA | MGI Sequence Detail	2031	Not Applicable
polypeptide	OTTMUSP00000063913	VEGA | MGI Sequence Detail	620	Not Applicable

Polymorphisms

• SNPs within 2kb
  44 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000030686 sterile alpha motif domain-containing protein 15
  (term hierarchy)
• InterPro Domains
  IPR001660 Sterile alpha motif domain
  IPR013761 Sterile alpha motif/pointed domain superfamily

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 19

  Gene Ontology 1

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582