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Taar6
Gene Detail
Symbol

Name
ID
Taar6
trace amine-associated receptor 6
MGI:2685074
Synonyms
LOC215855
Feature Type
protein coding gene
Genetic Map
Chromosome 10
11.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:23984609-23985646 bp, - strand
From VEGA annotation of GRCm38

  1038 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:27874  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 6 cattle

HCOP human homology predictions: TAAR6
Protein SuperFamily: trace amine-associated receptor
Gene Tree: Taar6

Human
homologs
TAAR6, trace amine associated receptor 6
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 319100
neXtProt AC: NX_Q96RI8

Human Synonyms: TA4, taR-4, TAR4, taR-6, TAR6, TRAR4

Human Chr (Location): 6q23.2; chr6:132570322-132571359 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Genomic Mutations involving Taar6 (2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Expression
Literature Summary: (1 records)
Data Summary: Results (13)    Tissues (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 11
RT-PCR 2
cDNA source data(2)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(2) Primer pair(1) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000019218 (Evidence)
Ensembl Gene Model ENSMUSG00000045111 (Evidence)
Entrez Gene 215855 (Evidence)
Consensus CDS Project CCDS23739.1
International Mouse Phenotyping Consortium Status Taar6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019218 VEGA Gene Model | MGI Sequence Detail 1038 C57BL/6J ±  kb
transcript OTTMUST00000046025 VEGA | MGI Sequence Detail 1038 Not Applicable 
polypeptide OTTMUSP00000020764 VEGA | MGI Sequence Detail 345 Not Applicable 

For the selected sequences
All sequences(12) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(23 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017452 GPCR, rhodopsin-like, 7TM
InterPro IPR000276 G protein-coupled receptor, rhodopsin-like
InterPro IPR009132 Trace amine receptor
Protein Ontology PR:000001715 trace amine-associated receptor 6
References
(Earliest) J:95733 Lindemann L, et al., Trace amine-associated receptors form structurally and functionally distinct subfamilies of novel G protein-coupled receptors. Genomics. 2005 Mar;85(3):372-85
(Latest) J:221172 Yoon KH, et al., Olfactory receptor genes expressed in distinct lineages are sequestered in different nuclear compartments. Proc Natl Acad Sci U S A. 2015 May 5;112(18):E2403-9
All references(22)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory