Taar6
Gene Detail

Symbol Name ID

Taar6 trace amine-associated receptor 6 MGI:2685074

Synonyms

LOC215855

Feature Type

protein coding gene

Genetic Map

Chromosome 10

11.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr10:23984609-23985646 bp, - strand From VEGA annotation of GRCm38   1038 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:27874  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 6 cattle

Protein SuperFamily: trace amine-associated receptor
Gene Tree: Taar6

Human homologs

Human Homolog		TAAR6, trace amine associated receptor 6
NCBI Gene ID		319100
neXtProt AC		NX_Q96RI8
Human Synonyms		RP11-295F4.3, TA4, taR-4, TAR4, taR-6, TAR6, TRAR4
Human Chr (Location)		6q23.2; chr6:132891461-132892498 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	G-protein coupled receptor signaling pathway, signal transduction
Component	integral to membrane, membrane, ...
Function	G-protein coupled amine receptor activity, G-protein coupled receptor activity, ...

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (13)    Tissues (3)   
Theiler Stages: 25, 28

Assay Type	Results
RNA in situ	11
RT-PCR	2

cDNA source data(2)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(4) cDNA(2) Primer pair(1) Other(1)
Microarray probesets(1)

Other database links

VEGA Gene Model	OTTMUSG00000019218 (Evidence)
Ensembl Gene Model	ENSMUSG00000045111 (Evidence)
Entrez Gene	215855 (Evidence)
Consensus CDS Project	CCDS23739.1
International Mouse Knockout Project Status	Taar6

Sequences

Length	Strain/Species
genomic	OTTMUSG00000019218	VEGA Gene Model | MGI Sequence Detail	1038	C57BL/6J
transcript	OTTMUST00000046025	VEGA | MGI Sequence Detail	1038	Not Applicable
polypeptide	OTTMUSP00000020764	VEGA | MGI Sequence Detail	345	Not Applicable

All sequences(12) RefSeq(2) UniProt(1)

Polymorphisms

SNPs(15 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR000276	GPCR, rhodopsin-like
InterPro	IPR017452	GPCR, rhodopsin-like, 7TM
InterPro	IPR009132	Trace amine receptor
Protein Ontology	PR:000001715	trace amine-associated receptor 6

References

(Earliest) J:95733 Lindemann L, et al., Trace amine-associated receptors form structurally and functionally distinct subfamilies of novel G protein-coupled receptors. Genomics. 2005 Mar;85(3):372-85
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(19)