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Sbspon Gene Detail
Summary
  • Symbol
    Sbspon
  • Name
    somatomedin B and thrombospondin, type 1 domain containing
  • Synonyms
    Gm106, LOC226866
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684952
    NCBI Gene: 226866
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:15853862-15892722 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 4.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    261 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684952
protein coding gene Chr1:15853862-15892722 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015851
protein coding gene Chr1:13328287-13361697 (-)
A/J MGP_AJ_G0015832
protein coding gene Chr1:13197413-13236103 (-)
AKR/J MGP_AKRJ_G0015791
protein coding gene Chr1:13203763-13241320 (-)
BALB/cJ MGP_BALBcJ_G0015788
protein coding gene Chr1:12912216-12948802 (-)
C3H/HeJ MGP_C3HHeJ_G0015622
protein coding gene Chr1:13204337-13239644 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016242
protein coding gene Chr1:13906194-13942671 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013963
protein coding gene Chr1:11832547-11865815 (-)
CAST/EiJ MGP_CASTEiJ_G0015203
protein coding gene Chr1:13297888-13335036 (-)
CBA/J MGP_CBAJ_G0015595
protein coding gene Chr1:14242621-14279207 (-)
DBA/2J MGP_DBA2J_G0015694
protein coding gene Chr1:12791282-12826324 (-)
FVB/NJ MGP_FVBNJ_G0015699
protein coding gene Chr1:12594108-12633428 (-)
LP/J MGP_LPJ_G0015766
protein coding gene Chr1:13534169-13569405 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015718
protein coding gene Chr1:14915046-14946899 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016289
protein coding gene Chr1:13138034-13179215 (-)
PWK/PhJ MGP_PWKPhJ_G0014987
protein coding gene Chr1:12576489-12610670 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014768
protein coding gene Chr1:13328621-13364595 (-)
WSB/EiJ MGP_WSBEiJ_G0015266
protein coding gene Chr1:13100667-13137971 (-)



Homology
more
  • Human Ortholog
    SBSPON, somatomedin B and thrombospondin type 1 domain containing
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SBSPON, somatomedin B and thrombospondin type 1 domain containing
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C8orf84, RPESP
  • Links
    NCBI Gene ID: 157869
    neXtProt AC: NX_Q8IVN8
    UniProt: Q8IVN8

  • Chr Location
    8q21.11; chr8:73063077-73093272 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 226866 NCBI Gene Model | MGI Sequence Detail 38861 C57BL/6J ±  kb
transcript NM_001033288 RefSeq | MGI Sequence Detail 2748 C57BL/6  
polypeptide Q3UPR9 UniProt | EBI | MGI Sequence Detail 264 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014180 somatomedin-B and thrombospondin type-1 domain-containing protein
  • InterPro Domains
    IPR001212 Somatomedin B domain
    IPR036024 Somatomedin B-like domain superfamily
    IPR000884 Thrombospondin type-1 (TSP1) repeat
    IPR036383 Thrombospondin type-1 (TSP1) repeat superfamily
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory