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Trav3-4 Gene Detail
Summary
  • Symbol
    Trav3-4
  • Name
    T cell receptor alpha variable 3-4
  • Feature Type
    gene segment
  • IDs
    MGI:2684925
    NCBI Gene: 211027
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:54014528-54015033 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.51 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684925
gene segment Chr14:54014413-54015033 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002564
gene segment Chr14:47675611-47676227 (+)
A/J MGP_AJ_G0002535
gene segment Chr14:46780559-46781175 (+)
AKR/J MGP_AKRJ_G0002526
gene segment Chr14:48471600-48472216 (+)
BALB/cJ MGP_BALBcJ_G0002521
gene segment Chr14:46755578-46756194 (+)
C3H/HeJ MGP_C3HHeJ_G0002488
gene segment Chr14:48140497-48141113 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002662
gene segment Chr14:50133173-50135168 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002216
gene segment Chr14:44554588-44555138 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002487
gene segment Chr14:51585016-51585632 (+)
DBA/2J MGP_DBA2J_G0002491
gene segment Chr14:46515327-46515928 (+)
FVB/NJ MGP_FVBNJ_G0002519
gene segment Chr14:45996968-45997584 (+)
LP/J MGP_LPJ_G0002570
gene segment Chr14:48709702-48710318 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002494
gene segment Chr14:51045880-51046496 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002672
gene segment Chr14:47660829-47661445 (+)
PWK/PhJ MGP_PWKPhJ_G0002401
gene segment Chr14:41948847-41949402 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002337
gene segment Chr14:42462081-42462617 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Synonyms
    TCRAV15S1, TCRAV5S1
  • Links
    NCBI Gene ID: 28688
    UniProt: A0A0B4J249

  • Chr Location
    14q11.2; chr14:21749190-21749705 (+)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 211027 NCBI Gene Model | MGI Sequence Detail 506 C57BL/6J ±  kb
transcript AK043253 GenBank | ENA | DDBJ | MGI Sequence Detail 3595 C57BL/6J  
polypeptide A0A075B654 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/14/2022
MGI 6.19
The Jackson Laboratory