About   Help   FAQ
Ttc6 Gene Detail
Summary
  • Symbol
    Ttc6
  • Name
    tetratricopeptide repeat domain 6
  • Synonyms
    4921506M07Rik, AU024163, EG639426, Gm9813, LOC217602
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684915
    NCBI Gene: 70846
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:57564113-57737928 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 24.70 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    732 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684915
 protein coding gene Chr12:57546704-57737928 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019762
 protein coding gene Chr12:56740559-56940765 (+)
A/J MGP_AJ_G0019721
 protein coding gene Chr12:54670773-54849847 (+)
AKR/J MGP_AKRJ_G0019696
 protein coding gene Chr12:56404927-56577438 (+)
BALB/cJ MGP_BALBcJ_G0019701
 protein coding gene Chr12:55041598-55214175 (+)
C3H/HeJ MGP_C3HHeJ_G0019506
 protein coding gene Chr12:56491324-56677079 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020153
 protein coding gene Chr12:58433215-58608830 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017773
 protein coding gene Chr12:53124993-53294315 (+)
CAST/EiJ MGP_CASTEiJ_G0019058
 protein coding gene Chr12:51418957-51591751 (+)
CBA/J MGP_CBAJ_G0019475
 protein coding gene Chr12:60516356-60712319 (+)
DBA/2J MGP_DBA2J_G0019591
 protein coding gene Chr12:54587176-54751974 (+)
FVB/NJ MGP_FVBNJ_G0019579
 protein coding gene Chr12:53870306-54042696 (+)
LP/J MGP_LPJ_G0019663
 protein coding gene Chr12:56720649-56899029 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019617
 protein coding gene Chr12:62058574-62284031 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020187
 protein coding gene Chr12:55855392-56036961 (+)
PWK/PhJ MGP_PWKPhJ_G0018825
 protein coding gene Chr12:48981513-49159879 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018618
 protein coding gene Chr12:50289370-50465425 (+)
WSB/EiJ MGP_WSBEiJ_G0019109
 protein coding gene Chr12:56394485-56579467 (+)



Homology
more
  • Human Ortholog
    TTC6, tetratricopeptide repeat domain 6
  • Vertebrate Orthologs
    3
  • Human Ortholog
    TTC6, tetratricopeptide repeat domain 6
    Orthology source: HGNC
  • Synonyms
    C14orf25, NCRNA00291
  • Links
    NCBI Gene ID: 319089
    UniProt: Q86TZ1

  • Chr Location
    14q21.1; chr14:37595199-37842628 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    647
  • Tissues
    14
  • cDNA Data
    11
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046782 Ensembl Gene Model | MGI Sequence Detail 173816 C57BL/6J ±  kb
transcript ENSMUST00000172939 Ensembl | MGI Sequence Detail 5782 Not Applicable  
polypeptide ENSMUSP00000134273 Ensembl | MGI Sequence Detail 1857 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR006597 Sel1-like repeat
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
    IPR001440 Tetratricopeptide repeat 1
    IPR013026 Tetratricopeptide repeat-containing domain
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918096, MGI:3034924, MGI:3645573
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
04/06/2021
MGI 6.16 		The Jackson Laboratory