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Scml1 Pseudogene Detail
Summary
  • Symbol
    Scml1
  • Name
    Scm polycomb group protein like 1
  • Synonyms
    LOC195726, LOC386491
Location &
Maps
more
  • Sequence Map
    ChrX:161814693-161821395 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 74.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684893
pseudogene ChrX:161814690-161832176 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007573
lincRNA gene ChrX:159785051-159786904 (-)
A/J MGP_AJ_G0007571
lincRNA gene ChrX:159030430-159032283 (-)
AKR/J MGP_AKRJ_G0007541
lincRNA gene ChrX:164096246-164098099 (-)
BALB/cJ MGP_BALBcJ_G0007546
lincRNA gene ChrX:157053258-157055111 (-)
C3H/HeJ MGP_C3HHeJ_G0007493
lincRNA gene ChrX:160172841-160174694 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007719
lincRNA gene ChrX:164534463-164536316 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006893
lincRNA gene ChrX:150182278-150184293 (-)
CAST/EiJ MGP_CASTEiJ_G0007394
lincRNA gene ChrX:139175273-139177270 (-)
CBA/J MGP_CBAJ_G0007474
lincRNA gene ChrX:169234620-169236473 (-)
DBA/2J MGP_DBA2J_G0007499
lincRNA gene ChrX:157962485-157964338 (-)
FVB/NJ MGP_FVBNJ_G0007515
lincRNA gene ChrX:157091654-157093507 (-)
LP/J MGP_LPJ_G0007579
lincRNA gene ChrX:160982114-160983967 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007494
lincRNA gene ChrX:177931923-177933776 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007721
lincRNA gene ChrX:159305648-159307501 (-)
PWK/PhJ MGP_PWKPhJ_G0007331
lincRNA gene ChrX:136013655-136015659 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007235
lincRNA gene ChrX:139607698-139609730 (-)
WSB/EiJ MGP_WSBEiJ_G0007456
lincRNA gene ChrX:157297259-157299256 (-)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    1 phenotype reference
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous or hemizygous for a null mutation are viable and fertile but dense bodies are absent from almost all pachytene spermatocytes.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 195726 NCBI Gene Model | MGI Sequence Detail 6703 C57BL/6J ±  kb
transcript NM_001374204 RefSeq | MGI Sequence Detail 2222 C57BL/6  
polypeptide NP_001361134 RefSeq | MGI Sequence Detail 501 C57BL/6  
For the selected sequence
Molecular
Reagents
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  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:2686638
References
more
  • Summaries
    All 11
    Phenotypes 1
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
  • Latest
    J:278848 Papanikos F, et al., The enigmatic meiotic dense body and its newly discovered component, SCML1, are dispensable for fertility and gametogenesis in mice. Chromosoma. 2017 Jun;126(3):399-415

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory