About   Help   FAQ
Arntl2
Gene Detail
 Symbol
Name
ID
Arntl2
aryl hydrocarbon receptor nuclear translocator-like 2
MGI:2684845
Synonyms 4632430A05Rik, bHLHe6, BMAL2, MOP9
Feature Type protein coding gene
Genetic Map
Chromosome 6
77.70 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:146796055-146833529 bp, + strand
From VEGA annotation of GRCm38

  37475 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10609  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Arntl2

Human
homologs
Human Homolog ARNTL2, aryl hydrocarbon receptor nuclear translocator-like 2
NCBI Gene ID 56938
neXtProt AC  NX_Q8WYA1
Human Synonyms  bHLHe6, BMAL2, CLIF, MOP9, PASD9
Human Chr (Location)  12p12.2-p11.2; chr12:27332854-27425813 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Arntl2 interacts with 151 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (24 annotations)
Process circadian rhythm, positive regulation of circadian rhythm, ...
Component cytoplasm, nucleolus, ...
Function DNA binding, E-box binding, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (124)    Tissues (121)    Images (11)
Theiler Stages: 2, 3, 4, 5, 17, 20, 21, 23, 26, 27, 28
Assay TypeResults
RNA in situ 116
RT-PCR 8
cDNA source data(5)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(6) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023496 (Evidence)
Ensembl Gene ModelENSMUSG00000040187 (Evidence)
Entrez Gene272322 (Evidence)
DoTSDT.110481806, DT.110481817, DT.55247188, DT.94296354, DT.97405600
NIA Mouse Gene IndexU007580
Consensus CDS ProjectCCDS20702.1
International Mouse Knockout Project StatusArntl2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023496 VEGA Gene Model | MGI Sequence Detail 37475 C57BL/6J ±  kb
transcript OTTMUST00000057210 VEGA | MGI Sequence Detail 2923 Not Applicable 
polypeptide OTTMUSP00000027581 VEGA | MGI Sequence Detail 579 Not Applicable 

For the selected sequences
All sequences(95) RefSeq(51) UniProt(5)
Polymorphisms SNPs within 2kb(542 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
InterPro IPR001067 Nuclear translocator
InterPro IPR001610 PAC motif
InterPro IPR000014 PAS domain
InterPro IPR013767 PAS fold
Protein Ontology PR:000004306 aryl hydrocarbon receptor nuclear translocator-like protein 2
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:1924837

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/09/2014
MGI 5.19
The Jackson Laboratory