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Arntl2 Gene Detail
Summary
  • Symbol
    Arntl2
  • Name
    aryl hydrocarbon receptor nuclear translocator-like 2
  • Synonyms
    4632430A05Rik, bHLHe6, BMAL2, MOP9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2684845
    NCBI Gene: 272322
  • Gene Overview
    MyGene.info: ARNTL2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:146796055-146833529 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 77.70 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    536 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684845
protein coding gene Chr6:146794730-146833529 (.)
129S1/SvImJ MGP_129S1SvImJ_G0031491
protein coding gene Chr6:151823479-151861976 (+)
A/J MGP_AJ_G0031466
protein coding gene Chr6:145805174-145842664 (+)
AKR/J MGP_AKRJ_G0031394
protein coding gene Chr6:150138638-150181433 (+)
BALB/cJ MGP_BALBcJ_G0031474
protein coding gene Chr6:145557290-145594698 (+)
C3H/HeJ MGP_C3HHeJ_G0031195
protein coding gene Chr6:150192426-150229975 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031935
protein coding gene Chr6:155871681-155908452 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029059
protein coding gene Chr6:144544303-144581031 (+)
CAST/EiJ MGP_CASTEiJ_G0030564
protein coding gene Chr6:149829602-149866361 (+)
CBA/J MGP_CBAJ_G0031155
protein coding gene Chr6:161820309-161863976 (+)
DBA/2J MGP_DBA2J_G0031311
protein coding gene Chr6:144583981-144621094 (+)
FVB/NJ MGP_FVBNJ_G0031263
protein coding gene Chr6:143326139-143362809 (+)
LP/J MGP_LPJ_G0031397
protein coding gene Chr6:151904061-151945294 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031303
protein coding gene Chr6:165545921-165586539 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031968
protein coding gene Chr6:149964305-150001514 (+)
PWK/PhJ MGP_PWKPhJ_G0030290
protein coding gene Chr6:143105105-143143914 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030114
protein coding gene Chr6:148082022-148150292 (+)
WSB/EiJ MGP_WSBEiJ_G0030657
protein coding gene Chr6:150580862-150618425 (+)



Homology
more
  • Human Ortholog
    ARNTL2, aryl hydrocarbon receptor nuclear translocator like 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ARNTL2, aryl hydrocarbon receptor nuclear translocator like 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bHLHe6, BMAL2, CLIF, MOP9, PASD9
  • Links
    NCBI Gene ID: 56938
    neXtProt AC: NX_Q8WYA1
    UniProt: Q8WYA1

  • Chr Location
    12p11.23; chr12:27332854-27425813 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10609
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ARNTL2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040187 Ensembl Gene Model | MGI Sequence Detail 37475 C57BL/6J ±  kb
transcript ENSMUST00000080530 Ensembl | MGI Sequence Detail 1740 Not Applicable  
polypeptide ENSMUSP00000079373 Ensembl | MGI Sequence Detail 579 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 7
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:1924837
References
more
  • Summaries
    All 39
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:242656 Lebailly B, et al., The circadian gene Arntl2 on distal mouse chromosome 6 controls thymocyte apoptosis. Mamm Genome. 2017 Feb;28(1-2):1-12

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory