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Snhg3 Gene Detail
Summary
  • Symbol
    Snhg3
  • Name
    small nucleolar RNA host gene 3
  • Synonyms
    Rnu17d, U17HG
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2684817
    NCBI Gene: 399101
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:132351933-132353686 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 65.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2684817
lncRNA gene Chr4:132348014-132353686 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015579
unclassified non-coding RNA gene Chr4:134493759-134499576 (-)
A/J MGP_AJ_G0015556
unclassified non-coding RNA gene Chr4:128904512-128910184 (-)
AKR/J MGP_AKRJ_G0015520
unclassified non-coding RNA gene Chr4:132523588-132529437 (-)
BALB/cJ MGP_BALBcJ_G0015518
unclassified non-coding RNA gene Chr4:129516633-129522308 (-)
C3H/HeJ MGP_C3HHeJ_G0015340
unclassified non-coding RNA gene Chr4:132783372-132791003 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015971
unclassified non-coding RNA gene Chr4:139343463-139349134 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013706
unclassified non-coding RNA gene Chr4:121981018-121986028 (-)
CAST/EiJ MGP_CASTEiJ_G0014895
unclassified non-coding RNA gene Chr4:130860628-130867212 (-)
CBA/J MGP_CBAJ_G0015321
unclassified non-coding RNA gene Chr4:142915483-142924274 (-)
DBA/2J MGP_DBA2J_G0015414
unclassified non-coding RNA gene Chr4:129327659-129333323 (-)
FVB/NJ MGP_FVBNJ_G0015422
unclassified non-coding RNA gene Chr4:128176347-128182027 (-)
LP/J MGP_LPJ_G0015495
unclassified non-coding RNA gene Chr4:134649729-134655526 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015445
unclassified non-coding RNA gene Chr4:147508616-147514280 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016013
unclassified non-coding RNA gene Chr4:132928534-132934208 (-)
PWK/PhJ MGP_PWKPhJ_G0014680
unclassified non-coding RNA gene Chr4:126007771-126013744 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014468
unclassified non-coding RNA gene Chr4:128801488-128807384 (-)
WSB/EiJ MGP_WSBEiJ_G0015000
unclassified non-coding RNA gene Chr4:133113567-133119221 (-)



Homology
more
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
  • Human Ortholog
    SNHG3, small nucleolar RNA host gene 3
    Orthology source: HGNC
  • Synonyms
    NCRNA00014, RNU17C, RNU17D, U17HG, U17HG-A, U17HG-AB
  • Links
    NCBI Gene ID: 8420

  • Chr Location
    1p35.3; chr1:28505943-28510892 (+)  GRCh38.p7

  • HCOP
    human homology predictions: SNHG3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Snhg3
  • Find Mice (IMSR)
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 399101 NCBI Gene Model | MGI Sequence Detail 1754 C57BL/6J ±  kb
transcript NR_003270 RefSeq | MGI Sequence Detail 437 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 1
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Phenotypes 9
  • Earliest
    J:48643 Pelczar P, et al., The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Mol Cell Biol. 1998 Aug;18(8):4509-18
  • Latest
    J:198500 Nakahara M, et al., Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from MSM/Ms mice. Mamm Genome. 2013 Jun;24(5-6):228-39

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory