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Lyrm4 Gene Detail
Summary
  • Symbol
    Lyrm4
  • Name
    LYR motif containing 4
  • Synonyms
    LOC380840, MGC:38622
  • Feature Type
    protein coding gene
  • IDs
    MGI:2683538
    NCBI Gene: 380840
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:35978797-36117357 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 14.44 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    868 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2683538
protein coding gene Chr13:35978395-36117526 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020461
protein coding gene Chr13:34181862-34332790 (-)
A/J MGP_AJ_G0020415
protein coding gene Chr13:33144945-33286117 (-)
AKR/J MGP_AKRJ_G0020393
protein coding gene Chr13:33970103-34110338 (-)
BALB/cJ MGP_BALBcJ_G0020411
protein coding gene Chr13:33210389-33370872 (-)
C3H/HeJ MGP_C3HHeJ_G0020210
protein coding gene Chr13:33838549-33974666 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020844
protein coding gene Chr13:35329884-35477540 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018431
protein coding gene Chr13:31374882-31508460 (-)
CAST/EiJ MGP_CASTEiJ_G0019725
protein coding gene Chr13:33554892-33696897 (-)
CBA/J MGP_CBAJ_G0020171
protein coding gene Chr13:36845798-37008669 (-)
DBA/2J MGP_DBA2J_G0020293
protein coding gene Chr13:32673646-32805879 (-)
FVB/NJ MGP_FVBNJ_G0020272
protein coding gene Chr13:32217788-32348429 (-)
LP/J MGP_LPJ_G0020368
protein coding gene Chr13:34404854-34557213 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020302
protein coding gene Chr13:36998753-37167971 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020887
protein coding gene Chr13:33570289-33711259 (-)
PWK/PhJ MGP_PWKPhJ_G0019480
protein coding gene Chr13:32785311-32922914 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019311
protein coding gene Chr13:32276428-32408139 (-)
WSB/EiJ MGP_WSBEiJ_G0019787
protein coding gene Chr13:33930212-34073563 (-)



Homology
more
  • Human Ortholog
    LYRM4, LYR motif containing 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LYRM4, LYR motif containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf149, CGI-203, COXPD19, ISD11
  • Links
    NCBI Gene ID: 57128
    neXtProt AC: NX_Q9HD34
    UniProt: Q9HD34

  • Chr Location
    6p25.1; chr6:5031029-5260950 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41373
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LYRM4
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human LYRM4 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    4
  • Genomic Mutations
    1 involving Lyrm4
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 380840 NCBI Gene Model | MGI Sequence Detail 138561 C57BL/6J ±  kb
transcript NM_201358 RefSeq | MGI Sequence Detail 1515 C57BL/6  
polypeptide Q8K215 UniProt | EBI | MGI Sequence Detail 91 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2685749
References
more
  • Summaries
    All 32
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:151002 Pagliarini DJ, et al., A mitochondrial protein compendium elucidates complex I disease biology. Cell. 2008 Jul 11;134(1):112-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory