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Tmem39b Gene Detail
Summary
  • Symbol
    Tmem39b
  • Name
    transmembrane protein 39b
  • Synonyms
    6330509E05Rik, MGC:59407
  • Feature Type
    protein coding gene
  • IDs
    MGI:2682939
    NCBI Gene: 230770
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:129676355-129696838 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.31 cM, cytoband D2.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    202 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2682939
protein coding gene Chr4:129676355-129696846 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028837
protein coding gene Chr4:131618547-131640030 (-)
A/J MGP_AJ_G0028796
protein coding gene Chr4:126356841-126378048 (-)
AKR/J MGP_AKRJ_G0028749
protein coding gene Chr4:129880797-129902955 (-)
BALB/cJ MGP_BALBcJ_G0028819
protein coding gene Chr4:126963310-126983996 (-)
C3H/HeJ MGP_C3HHeJ_G0028533
protein coding gene Chr4:129942755-129963445 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029261
protein coding gene Chr4:136561669-136591511 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026533
protein coding gene Chr4:119486909-119508926 (-)
CAST/EiJ MGP_CASTEiJ_G0027965
protein coding gene Chr4:128122648-128148210 (-)
CBA/J MGP_CBAJ_G0028499
protein coding gene Chr4:139984999-140012712 (-)
DBA/2J MGP_DBA2J_G0028648
protein coding gene Chr4:126792253-126812329 (-)
FVB/NJ MGP_FVBNJ_G0028615
protein coding gene Chr4:125549008-125569186 (-)
LP/J MGP_LPJ_G0028749
protein coding gene Chr4:131923395-131952200 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028641
protein coding gene Chr4:144762775-144787237 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029299
protein coding gene Chr4:130249445-130272307 (-)
PWK/PhJ MGP_PWKPhJ_G0027687
protein coding gene Chr4:123392637-123413456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027513
protein coding gene Chr4:126118832-126140697 (-)
WSB/EiJ MGP_WSBEiJ_G0028046
protein coding gene Chr4:130377564-130400041 (-)



Homology
more
  • Human Ortholog
    TMEM39B, transmembrane protein 39B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TMEM39B, transmembrane protein 39B
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55116
    neXtProt AC: NX_Q9GZU3
    UniProt: Q9GZU3

  • Chr Location
    1p35.2; chr1:32072031-32102866 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000053730 Ensembl Gene Model | MGI Sequence Detail 20484 C57BL/6J ±  kb
transcript ENSMUST00000102588 Ensembl | MGI Sequence Detail 1810 Not Applicable  
polypeptide ENSMUSP00000099648 Ensembl | MGI Sequence Detail 492 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 31
    cDNA 31

    Microarray probesets 1
Other
Accession IDs
less
MGI:1923394
References
more
  • Summaries
    All 29
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory