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Tmem39b Gene Detail
Summary
  • Symbol
    Tmem39b
  • Name
    transmembrane protein 39b
  • Synonyms
    6330509E05Rik, MGC:59407
  • Feature Type
    protein coding gene
  • IDs
    MGI:2682939
    NCBI Gene: 230770
Location & Maps
more
  • Sequence Map
    Chr4:129676355-129696838 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20484 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 63.31 cM, cytoband D2.3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TMEM39B, transmembrane protein 39B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TMEM39B, transmembrane protein 39B
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 55116
    neXtProt AC: NX_Q9GZU3

  • Chr Location
    1p35.1; chr1:32072031-32102866 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    4 involving Tmem39b
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009517 VEGA Gene Model | MGI Sequence Detail 20484 C57BL/6J ±  kb
transcript OTTMUST00000021763 VEGA | MGI Sequence Detail 1810 Not Applicable  
polypeptide OTTMUSP00000009928 VEGA | MGI Sequence Detail 492 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    202 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000031382 transmembrane protein 39B
  • InterPro Domains
    IPR019397 Uncharacterised protein family TMEM39
Molecular
Reagents
less
  • All nucleic 30
    cDNA 30

    Microarray probesets 1
Other
Accession IDs
less
MGI:1923394
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory