Tmprss13
Gene Detail

Symbol Name ID

Tmprss13 transmembrane protease, serine 13 MGI:2682935

Feature Type

protein coding gene

Genetic Map

Chromosome 9

24.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr9:45319100-45347581 bp, + strand From VEGA annotation of GRCm38   28482 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Mammalian homology

human; rat; cattle; chimpanzee; dog, domestic    (Mammalian Orthology)
Comparative Map (Mouse/Human Tmprss13 ± 2 cM)

Protein SuperFamily: transmembrane serine protease, TMPRSS13 type
Gene Tree: Tmprss13

Human ortholog

TMPRSS13 transmembrane protease, serine 13 NCBI Gene ID 84000
Human Synonyms: MSP, MSPL, MSPS, TMPRSS11
Human Chr11:117771360-117800115 bp, - strand Reference GRCh37.p2 Primary Assembly

Alleles and phenotypes

All alleles(1) : Targeted(1)
 

Mice homozygous for disruptions in this gene display a normal phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (11 annotations)

Process	proteolysis
Component	integral to membrane, membrane
Function	catalytic activity, hydrolase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (80)    Tissues (57)    Images (16)
Theiler Stages: 28

Assay Type	Results
In situ reporter (knock in)	40
RT-PCR	40

cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(7) cDNA(5) Primer pair(2)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000024620 (Evidence)
Ensembl Gene Model	ENSMUSG00000037129 (Evidence)
Entrez Gene	214531 (Evidence)
DFCI	TC1585278
DoTS	DT.482789
NIA Mouse Gene Index	U010413
EC	3.4.21.-
Consensus CDS Project	CCDS23132.1
International Mouse Knockout Project Status	Tmprss13

Sequences

Length	Strain/Species
genomic	OTTMUSG00000024620	VEGA Gene Model | MGI Sequence Detail	28482	C57BL/6J
transcript	OTTMUST00000060524	VEGA | MGI Sequence Detail	3245	Not Applicable
polypeptide	OTTMUSP00000029524	VEGA | MGI Sequence Detail	548	Not Applicable

All sequences(21) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(213 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat
InterPro	IPR009003	Peptidase cysteine/serine, trypsin-like
InterPro	IPR001314	Peptidase S1A, chymotrypsin-type
InterPro	IPR017327	Peptidase S1A, TMPRSS13
InterPro	IPR001254	Peptidase S1/S6, chymotrypsin/Hap
InterPro	IPR018114	Peptidase S1/S6, chymotrypsin/Hap, active site
InterPro	IPR001190	Speract/scavenger receptor
InterPro	IPR017448	Speract/scavenger receptor-related
Protein Ontology	PR:000016455	transmembrane protease serine 13

References

(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)