Zc3h4
Gene Detail

Symbol

Name
ID

Zc3h4
zinc finger CCCH-type containing 4
MGI:2682314

Synonyms

Bwq1, Kiaa1064-hp, LOC330474, MGC:67629, mKIAA1064

Feature Type

protein coding gene

Genetic Map

Chromosome 7
9.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(7)

Sequence Map

Chr7:16401196-16437694 bp, + strand From Ensembl annotation of GRCm38   36499 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:87150  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog

Gene Tree: Zc3h4

Human
homologs

Human Homolog		ZC3H4, zinc finger CCCH-type containing 4
NCBI Gene ID		23211
neXtProt AC		NX_Q9UPT8
Human Synonyms		C19orf7
Human Chr (Location)		19q13.32; chr19:47064187-47113752 (-)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(191) : Gene trapped(188) QTL(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )

Interactions

Zc3h4 interacts with 324 markers (Mir7-1, Mir7-2, Mir7b, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (3 annotations)

Function

metal ion binding, poly(A) RNA binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)

Data Summary: Results (13)    Tissues (11)    Images (3)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	13

cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(10) Genomic(2) cDNA(8)
Microarray probesets(1)

Other database
links

Ensembl Gene Model	ENSMUSG00000059273 (Evidence)
Entrez Gene	330474 (Evidence)
DFCI	TC1606812, TC1660881, TC1657339, TC1627428
DoTS	DT.99849861, DT.97353519, DT.101394861, DT.101394859
NIA Mouse Gene Index	U007711
Consensus CDS Project	CCDS52040.1
International Mouse Knockout Project Status	Zc3h4

Sequences

Length	Strain/Species
genomic	ENSMUSG00000059273	Ensembl Gene Model | MGI Sequence Detail	36499	C57BL/6J
transcript	ENSMUST00000098789	Ensembl | MGI Sequence Detail	6049	Not Applicable
polypeptide	ENSMUSP00000096386	Ensembl | MGI Sequence Detail	1255	Not Applicable

All sequences(50) RefSeq(16) UniProt(9)

Polymorphisms

SNPs within 2kb(193 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR000571	Zinc finger, CCCH-type
Protein Ontology	PR:000031210	zinc finger CCCH domain-containing protein 4

References

(Earliest) J:48704 Suto J, et al., Genetics of obesity in KK mouse and effects of A(y) allele on quantitative regulation. Mamm Genome. 1998 Jul;9(7):506-10
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(40)

Other
accession IDs

MGI:1298203, MGI:2389001, MGI:2685614