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Chil6
Gene Detail
Symbol

Name
ID
Chil6
chitinase-like 6
MGI:2682303
Synonyms
BC051070, BYm, MGC:58999
Feature Type
protein coding gene
Genetic Map
Chromosome 3
46.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr3:106387388-106406182 bp, - strand
From Ensembl annotation of GRCm38

  18795 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:77638  Vertebrate Homology Class
1 mouse; 1 rat

Protein SuperFamily: chitinase-like protein
Gene Tree: Chil6

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chil6 interacts with 41 markers (Mir1a-1, Mir1a-2, Mir10b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process chitin catabolic process, immune response
Component cytoplasm, extracellular region
Function chitinase activity, chitin binding
External Resources: FuncBase
Expression
cDNA source data(1)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(1) cDNA(1)
Microarray probesets(1)
Other database
links
Ensembl Gene ModelENSMUSG00000027902 (Evidence)
Entrez Gene229688 (Evidence)
UniGene261645
DFCITC1596086
DoTSDT.101358512
NIA Mouse Gene IndexU024484
Consensus CDS ProjectCCDS17720.1
International Mouse Knockout Project StatusChil6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027902 Ensembl Gene Model | MGI Sequence Detail 18795 C57BL/6J ±  kb
transcript ENSMUST00000029510 Ensembl | MGI Sequence Detail 1664 Not Applicable 
polypeptide ENSMUSP00000029510 Ensembl | MGI Sequence Detail 440 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(6) UniProt(2)
Polymorphisms
SNPs within 2kb(101 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011583 Chitinase II
InterPro IPR013781 Glycoside hydrolase, catalytic domain
InterPro IPR001223 Glycoside hydrolase, family 18, catalytic domain
InterPro IPR017853 Glycoside hydrolase, superfamily
References
(Earliest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
(Latest) J:202092 Hussain M, et al., New paralogues and revised time line in the expansion of the vertebrate GH18 family. J Mol Evol. 2013 Apr;76(4):240-60
All references(20)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory